Misgurnus anguillicaudatus (oriental weatherfish): 129447246
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Entry
129447246 CDS
T09481
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129447246 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
manu03019
]
129447246 (mtrex)
03041 Spliceosome [BR:
manu03041
]
129447246 (mtrex)
03009 Ribosome biogenesis [BR:
manu03009
]
129447246 (mtrex)
03016 Transfer RNA biogenesis [BR:
manu03016
]
129447246 (mtrex)
Enzymes [BR:
manu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129447246 (mtrex)
Messenger RNA biogenesis [BR:
manu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
129447246 (mtrex)
Spliceosome [BR:
manu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
129447246 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
129447246 (mtrex)
Ribosome biogenesis [BR:
manu03009
]
Eukaryotic type
Pre-60S particles
Helicases
129447246 (mtrex)
Transfer RNA biogenesis [BR:
manu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
129447246 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
129447246
NCBI-ProteinID:
XP_055064870
LinkDB
All DBs
Position
7:22828207..22868847
Genome browser
AA seq
1037 aa
AA seq
DB search
MADAFGDDLFSVFDEEQSGSSKKATPKSGTQSGKTPDKSGKKQTGSPAAAVRKRDVDNDG
PDEMVLGKRQKLETVSSEEISLAELMPKVKVEQVETVEGCTHEVALPADEEYTQLKPRVG
KAAKEYPFILDPFQREALLCMDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLLTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVI
FDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDAGDTGGSSGGKWDPKGRK
GGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNTDDEKKLVEEVFN
NAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETF
AMGINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSP
AVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVLEKM
KKLEEDYNGIQIPNEESVVTYYKIRQQLAKLGKEIEEFIHKPKYCLPFLQPGRLVRVKKE
DLDFGWGVVVNFSKKTNVKATPGDLDPLYVVEVLVHCSKDSVKNAATEAAKPAAHGEKGE
MQVVPVMLHLVTSISSVRLYIPKDLRPYDNRQSMLKCIQEVQKRFPDGVPLLDPIDDMGI
KDPGLKKVIQKVEAFEHRMYTHPLHSDPNLEAVYSLCEKKALIAGDIKTAKRELKKARTV
LQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMIFNGLFNDLTAEQA
TALLSCFVFQENANEMPKLTEQLAAPLRQMQECAKRIAKVSAEAKLDIDEDDYLKQFRPH
LMDVVYTWANGSSFSQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAM
GITKIKRDIVFAASLYL
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcatttggtgatgatttgtttagcgtttttgatgaagaacagtctggttcc
agtaaaaaagccactccaaagtcgggaactcagtcagggaagacacctgataaatctggg
aaaaagcagacaggttcaccagctgcagctgtccgcaaaagagatgttgacaatgatggt
ccagatgagatggtgctcgggaaaagacaaaagctggaaaccgtgtcatctgaggagatc
agtctggcagagctcatgcctaaagtgaaggtggagcaagtggagacagtggagggatgc
acacatgaggtggctttacctgctgatgaagaatacacacagctgaaaccacgggttgga
aaagcagctaaggagtatccgttcatactcgacccctttcagcgtgaggcccttctctgc
atggacaacaaccagtctgtgcttgtgtcggcccatacgtctgcaggaaagactgtgtgt
gcagagtatgccatcgctctggcgcttcgagaaaaacaacgagtgatcttcaccagtccc
atcaaagctttgagtaaccagaagtacagagagatgtacgaggagttccaggatgtaggt
ctgctgaccggtgatgtcaccattaaccccacggcctcttgtctggtcatgactactgag
attttaaggagcatgctctacagaggatcagaggtgatgagggaggtggcgtgggtgatc
tttgatgagatccattacatgagagacgcagagcgtggagtggtctgggaggaaaccatc
atcttgctgccagacaatgtgcactacgtctttttgtctgccaccattcccaacgctcga
cagtttgccgagtggatctgtcatcttcacaaacaaccctgtcacgtggtgtacacagac
taccgccccactcctctgcagcactacatttttccagcaggtggcgatggactacatctt
gtcgtggatgaaaatggggagtttagagaagacaatttcaacacagccatgcaagtcctg
agggatgcgggggacacaggaggtagcagtggggggaaatgggaccccaaaggcagaaaa
ggtggaaccaaaggtccatccaatgtcttcaagattgtaaagatgatcatggagagaaac
ttccagccggtgatcatcttcagcttcagtaagaaggagtgtgaggcttatgccctgcaa
gtggccaaactggattttaatacagatgatgagaaaaagctggtggaggaagttttcaac
aatgccatagactgcctctccgatgaagacaagaagctgcctcaggttgaacatgttttg
ccgttgctgaagaggggaatcggaattcatcatggaggtctgcttcccatcctgaaggaa
actattgagatcctcttctccgagggtctactgaaggccttgtttgctacagaaacattc
gccatggggatcaacatgcccgcccgaaccgttctgttcaccagcgcacgtaaatttgac
gggaaagactttcgctggatcacttctggagagtacatccagatgtcaggtcgtgctgga
agaagaggaatggacgaaaggggaatcgtcatattcatggtggatgagaaaatgagcccc
gctgtcggcaaacagttactaaagggttcggctgatcctctgaacagtgctttccacctc
acctacaacatggtgctgaatcttctgcgtgtggaggagatcaatccagagtacatgttg
gagaaatccttttaccagtttcagcattacagagctgtgcctggggttctggaaaagatg
aaaaagttggaggaggactacaatggcatacaaatccctaatgaagagagcgtggtgacc
tactacaaaattcgccagcagctggccaaactgggcaaagagatcgaggagtttattcat
aagcctaaatactgcctgcccttcctgcaacccggcagactggtcagggtgaaaaaagaa
gatttggattttggttggggtgtagtcgtcaatttctcaaagaagacaaatgttaaggct
acccctggtgatcttgacccgttgtatgtcgtggaggttctggtccactgcagtaaggac
agcgtgaagaacgcggccacagaggcggccaaaccagcagcccacggagaaaagggcgag
atgcaggtcgttcctgtgatgctgcatctcgtcacctccatcagctcggtccgtctctac
attcccaaagacctgagaccttatgacaacagacagagcatgctcaaatgcatacaggag
gtgcaaaaacgttttccagacggcgtccctctgctcgatccaatagatgacatgggtatc
aaggatccagggctaaagaaggtcatccagaaagttgaagcgttcgagcacagaatgtac
acacacccccttcacagtgaccctaacctggaggccgtctacagcctctgtgagaagaaa
gccctgattgcgggtgacatcaaaacggcgaagcgtgagctaaagaaagctcgtacggta
ctccagatggatgagctgaagtgcaggaagcgcgtgctgagacgcctgggattcgccact
tcctccgatgtcatcgagatgaaaggtcgcgtggcgtgcgagatcagcagtgcggatgag
ctgctgttaacagagatgatatttaacggactcttcaacgacctgacggcagagcaggcc
accgctcttctcagctgcttcgtcttccaggaaaacgccaacgagatgcccaaactaaca
gagcagctggctgcacctctccgacagatgcaggaatgcgcaaaacgtatcgctaaagta
tcagcagaagccaagctggacatagatgaagacgattatctgaagcagtttcgtccacac
ctgatggatgtagtctacacctgggccaacggctcctccttctctcaaatatgcaagatg
acggatgtgtttgaaggaagtataatccgctgcatgcgcagattggaagagctcttaagg
cagatgtgccaggcggcaaaggccattggaaacacagagctggagaacaaatttgcaatg
ggtatcacgaagattaagagggatattgtgtttgctgctagtctctacctgtga
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