Misgurnus anguillicaudatus (oriental weatherfish): 129448562
Help
Entry
129448562 CDS
T09481
Symbol
col4a6
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu04510
Focal adhesion
manu04512
ECM-receptor interaction
manu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129448562 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129448562 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
129448562 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
manu04147
]
129448562 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
manu00536
]
129448562 (col4a6)
Exosome [BR:
manu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
129448562 (col4a6)
Glycosaminoglycan binding proteins [BR:
manu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129448562 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
129448562
NCBI-ProteinID:
XP_055067014
LinkDB
All DBs
Position
1:46246310..46329276
Genome browser
AA seq
1684 aa
AA seq
DB search
MKLWSCVLAVLYAGSSYGGFDVQEPCAGRDCRGRCPCVPLKGSRGQPGPLGPVGSTGPEG
FSGNLGPHGPKGETGHAGRKGLSGPKGDKGPMGVPGFAGNDGVPGHPGQQGSIGPPGLDG
CNGTQGDPGDRARDGFPGLPGSPGFPGQKGQKGEPLYINLSPSPILVKGLPGPVGFPGLA
GPSGPDGFPGLPGPPGLPGPPGSPGQGYKGEPGEKGDVGQLGDPGRSSVNGVVEFVGFPK
GDKGVKGDKGYQGETGFPGSPGIPSPFTFRGETGEKGILGLPGLRGPPGLNGSPGPEGRK
GFSGDQGLPGQPGWSGVKGERGDPGPPGPSFGQTSAIPGPQGDPGFPGYPGLNGDQGFPG
LPGLPGLPGVPAFLAGRPGLPGFPGSRGLKGQKGNPGRASYGPEGLPGSQGPPGFPGPSG
PPGAPPPVGELTLGQPGPTGRPGPRGILGDRGIKGFKGENGDCDCFGGGNTGEQGPPGPP
GPPGISGLNGVKGEVGDSGFPGSRGQQGPDGRGGDRGFSGRKGQKGESFFAEGRGQKGEI
GQQGPAGPAGQTGRPGRDGSSGYPGPPGLPGDPGFGVTGDKGFPGIPGAKGRTGPVGFPG
IGYPGAAGLKGSQGDPGFNGLPGVPGPPGTRGDSCGMAGFNDAFLEEGGIELPCRIPGEY
GDPGYPGRPGAPGPKGQPGSPGERGRIGFDGLKGERGDPGIGGLPGLQGFPGPRGDAGLP
GITNVGLQGSPGKNGFPGLPGAKGEPGVVLGATPGSPGLTGRQGDPGDKGQPGTPGFPGS
PGADGRNGFSGAKGERGLDGVPGPQGPVGPPGEYPPGGIAGPRGPAGPKGISGPSGFPGQ
KGARGDPGFPGPGGIKGAPGYTGFPGPQGFRGPPGPPGSGSRPGISGRPGIKGEKGSPGL
IGFPGFPGTTGFPGSPGIKGLPGFNGQDGSPGRQGARGIKGERGSQGLPGTVPVLPSEWL
KKGEPGDPGSSGSPGFPGPRGDKGFKGQPGRSGSPGRPGTADQAKGFPGEPGFPGIPGTP
GFPGPKGSPGLLGFPGMAGPRGDDGAPGSPGFPGTAGQRGGKGEKGDTYAVPGSPGSKGV
AGEPGFPGRPGLPGERGDPGYQGPYGFQGQKGLRGEPGAPGFGSPGLPGTRGFPGYQGQR
GRDGEPGRPGDQGSPGGKGSSGPPGLNGLDGLPGSKGQPGVPGVIEGGQRGQPGLPGRKG
ERGPSLPGGPGIPGDKGPKGERGFPGSRGYPGNQGPSGPPSPSNIPGPFGDPGLPGLDGR
EGPVGPPGPPGPPGFGTVQGERGDPGYSGLSGIPGPRGDAGIPGSPGRPGSPGFKGQPGD
PGNNGRPGQPGLRGEPGYYGSTGPKGSKGFTGPKGLPGFIIPPTNITGSRPIGDPGSQGR
TGPVGQPGPPGRAGSPGPSGPKGVRGSEGRRGPDGPPGSPGFSGDPGLAGIGGPTGNQGA
RGKPGLPGPPATPQRSVSIGYTLVKHSQSSFVPMCPQGMDKLWDGYSLLYVEGQEKAHNQ
DLGLAGSCLPYFSTIPFLYCTANEICHYASRNDKSYWLSTTAPIPMMPVADQQISQYISR
CSVCEAPAQAVAVHSQDLTIPTCPQGWRSLWIGYSFLMHTAAGAEGGGQSLMSPGSCLED
FRATPFIECNGARGTCHYFANKYSFWLTTVELNEQFTEGPSQETLKGDQYRARVSRCQVC
MKIL
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atgaagctttggagttgtgtgttagctgtcttgtatgcaggatcttcatacggggggttc
gacgttcaggagccatgtgcaggacgagactgcaggggaaggtgtccgtgtgtcccttta
aagggtagcagggggcagccagggccacttggaccagtagggagcaccggtcctgaggga
ttcagcggtaacctggggcctcatgggccaaaaggagaaacgggccatgcgggacgcaaa
gggctctctggaccaaagggggacaagggcccaatgggtgttcctgggtttgctggtaat
gacggtgttcctggacaccctggtcaacaggggtccattggacctccaggactagacggg
tgtaatggcacacaaggtgacccgggtgatagggcccgtgatggatttcctggtttacct
ggatctcctggattccctggtcaaaaaggacaaaaaggagaaccgctatatataaatctt
tcaccatccccaatacttgtgaaaggcctgccaggtccagtgggatttccaggtctagca
gggcccagtggtccagatggatttcctggtctgcctggtccacctggtcttccaggacca
ccaggaagcccaggtcaaggttacaaaggggagccgggagaaaagggagatgtgggccag
ctcggtgacccaggccgctcatcggtcaatggagtggtggagtttgttggctttcccaaa
ggagacaaaggagttaagggtgataaaggttatcaaggagaaacaggctttccagggagt
ccaggaataccaagcccgttcacttttagaggagagactggggaaaagggaattctggga
ttgccaggattgaggggtcctcctggtctgaatggatctcctgggcctgaaggccgaaaa
ggtttcagtggcgatcaaggtcttccaggccaaccaggctggtcgggagtaaaaggtgaa
agaggagacccaggtccacctggaccatcttttggacaaacaagtgcaattccaggtcct
cagggtgatcctgggtttcctggttatcctgggctaaatggagatcaaggttttccaggg
cttccaggtttgcctggtcttcccggagtgcctgcctttctcgcaggtcgtccaggcctt
cctgggttccctgggagtcgtggacttaaaggacagaagggaaacccaggtcgggccagc
tatggccctgaaggtcttcctggaagtcaggggcctcctggtttcccaggaccatctgga
ccacctggtgcaccaccccctgtaggtgaactcactttaggacaaccgggacctacaggt
cggccaggtccaagagggatacttggagacagaggcattaaagggtttaaaggagaaaat
ggcgactgtgattgtttcggtgggggcaacactggtgaacagggacctccggggcctcca
gggcccccgggtatttcaggactgaatggtgtgaagggagaagttggtgactcgggcttc
ccaggatctcgtggacaacagggcccagatggtcgtgggggtgacagaggcttttcaggg
cgtaaaggacagaaaggtgaatcctttttcgctgaaggcagaggacaaaaaggtgaaata
ggtcagcagggtcctgctgggccagctggacaaactggcaggcctggaagggatggatct
tctggttaccctggaccaccaggcttacctggggatcctggttttggagtgactggagat
aaaggttttcccggtatcccaggggccaaaggccgtactggtcctgttggatttcccggt
attggttaccctggtgcagctgggttgaaagggtcacaaggtgatcctggattcaatggc
cttcctggagtacctggacctccagggactcgaggtgacagctgtgggatggcggggttt
aatgatgcctttttggaagagggaggaatagaactgccttgtaggattcctggggaatat
ggcgatccaggatatcctggacgtcctggggcaccagggccaaagggtcagcctggctct
ccaggagagagaggacgaataggttttgatggactgaagggtgagagaggagacccaggc
attggaggtctgcctggtcttcagggttttcccggacctagaggagatgcaggtttacca
ggaataacaaatgttggcttacaagggtctcctggaaaaaatggttttccaggtcttcct
ggagcaaagggagaacctggtgttgttctaggggcaacccccggaagcccaggtcttaca
ggaaggcagggagatccaggagacaagggtcaacctggcacacctggttttccaggaagc
ccaggtgctgatggacgcaatggcttttctggtgcaaagggtgagcgaggtttggatgga
gtacctggtccccaaggtcctgtaggtccacctggtgaatatcctcctggaggtatcgct
ggacctaggggcccagctggacctaaagggatttctggaccttcaggattccctgggcag
aagggtgcgaggggagatccaggctttccagggcctggtggaataaagggtgctcctgga
tatactggttttccaggtccacagggatttaggggaccccctggaccccctggttctgga
tcacgtccaggcatatctggaagacctggaataaagggtgagaagggctctccagggctc
ataggattccctggatttcctggtactactggattcccaggtagcccgggtataaaaggt
ctccctggttttaatggacaggatggttcacctggtagacaaggagcaagaggaatcaaa
ggggaacgtggctcacagggtctcccgggaaccgttccagttcttccatcagagtggcta
aaaaagggtgaaccaggcgacccaggaagcagtggatcgcctggttttccaggaccaaga
ggtgataagggttttaagggacaacctgggcgctcaggctctccaggaagacctggtact
gcagaccaagcgaaaggttttcctggcgagcctggattcccgggtattcctggtacacct
ggtttccctgggccgaaaggttcacctggtcttttggggtttcctggcatggctggcccg
aggggtgatgatggtgcacctggatctccagggttcccggggactgcaggacagcgtggt
ggcaaaggtgaaaagggtgacacgtatgcagtacctgggtctcctggatccaaaggtgtt
gctggagagcctggttttccaggacgtccagggcttcctggtgaacgtggtgatccaggt
taccaaggaccttatgggtttcaagggcagaaaggtcttcgtggagagccaggagcacca
ggatttggctcaccaggtctcccaggcactaggggtttcccgggttatcaaggacagagg
gggcgtgatggagaaccgggccgccctggagatcaaggttcacctggagggaaaggttca
tcagggccacctggtttaaatggactcgatggtcttcctggatccaaggggcagcctgga
gtaccaggtgtgattgaaggtggtcagcgaggtcagcctggtttgcctggtcgtaaggga
gagagaggcccatcgcttcccggaggccctgggattcctggagataaaggacctaaagga
gaaaggggttttcctggttctagaggctaccctggaaatcaaggcccttctggtccacct
agtccctctaatatcccaggtcctttcggagaccctggacttccaggattagatggacgg
gaaggtcctgttggtcctcctggcccccctggtcccccaggctttggaacagttcaagga
gaaagaggagatcctggttattctggactatcaggcataccaggaccacgtggagacgct
ggtattcctggttctcctggaagaccaggatctcctggattcaaaggtcaaccaggtgac
cctggtaataatggtagaccaggacaaccaggattgcgtggagaaccaggatattatggc
agcacaggacccaaaggatccaagggttttactggtcctaaggggcttcctggttttatt
ataccacctactaacataactggtagcaggccaattggtgatccaggctctcaaggtcgt
actggacctgttggtcagccaggaccaccaggccgtgcgggcagtccaggaccctcaggt
cccaaaggtgttagggggtcagagggtagacgtggcccggatggtccacctggatctccg
gggttctcaggagaccctgggcttgcaggaatcggaggaccaacaggaaaccaaggcgcc
cgtggcaagccaggcttaccaggtccccctgctacaccgcaacgtagtgtcagtattggt
tatactctggtaaaacacagtcagtccagcttcgtccccatgtgtcctcaaggtatggac
aagttgtgggatggctacagtttgctttatgtggaaggacaggagaaagcacacaaccaa
gatctgggattggctggctcctgcctgccttatttcagcaccatccctttcctgtattgc
acagccaatgaaatttgtcattatgccagccgcaatgacaaatcctattggttatccacc
acggcacccattcccatgatgcctgtagcagatcagcagatatcccagtacattagccgc
tgctcagtgtgtgaggctccagctcaagcagtcgctgtccatagccaagatctcaccata
cctacttgtcctcaggggtggagaagtctgtggatcggttactcattccttatgcacaca
gccgcaggtgcagaaggtggtggccagtctttaatgtcacccggttcttgtctggaggat
ttccgtgccacacccttcattgagtgcaacggtgcccgtggcacatgccattacttcgcc
aacaagtacagtttctggctgaccaccgtggaactgaacgaacagttcacagagggtcca
tcccaagaaacgctgaaaggagatcagtatcgcgcacgagtcagccgctgtcaggtctgc
atgaagatcttgtga
DBGET
integrated database retrieval system
