Misgurnus anguillicaudatus (oriental weatherfish): 129450427
Help
Entry
129450427 CDS
T09481
Symbol
dhx38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129450427 (dhx38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
manu03041
]
129450427 (dhx38)
Enzymes [BR:
manu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129450427 (dhx38)
Spliceosome [BR:
manu03041
]
Complex C
Other components
Step II factors
129450427 (dhx38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
AAA_16
Flavi_DEAD
PhoH
Motif
Other DBs
NCBI-GeneID:
129450427
NCBI-ProteinID:
XP_055069149
LinkDB
All DBs
Position
1:complement(53876569..53913475)
Genome browser
AA seq
1257 aa
AA seq
DB search
MEDDASLHRLEGSDPRVQVGGLIVKKKSASTEQHVFRVPAPRTSLLGLDLLAAQKRKERE
GKEILDDQPKKSKVSSFKDWEEGKSDSDSDDENQEDGDSKNVKKERKYRVTGSETPSNPG
GVSEEFKQRHQQREKDRREHGVYASSKEDKSRDRDRTRDRDQDRSRDREREKRRDRDERE
SSRGSGSSRSERGDGSVRSERSQREFGSERLSRGGRRDEPESPRNRHKELATPSRSSWDE
DDSGYNSSRHSHWESPSPSPSHRESERSERSHRSVRDSERKDKSVRGQYPADTPLPTPSY
KYNEWANDRKHLGSTPRLSRGKGDKREDGDNGITFNDEDEKEQWEEDQRQADRDWYMMDE
GYDEFHNPLTSSSEEYVKKREQILQKQTQKRISAQKRQINEDNERWETNRMLTSGVVQRL
EVDEDFEEDNAAKVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDPTSDMAIISRKGSQLV
RRHREQKERKKAQHKHWELAGTKLGDIMGIKKKEDGGEGNAVGEDGTVDYRTEQKFADHM
KEKSEASSDFAKKKTLLEQRQYLPIFAVRQELLNIIRDNNIVIVVGETGSGKTTQLTQYL
HEDGYTGYGMVGCTQPRRVAAMSVAKRVSEEMNCNLGEEVGYAIRFEDCTSEKTVIKYMT
DGILLRESLRESDLDHYSAVIMDEAHERSLNTDVLFGLLREVVSRRSDLKLIVTSATMDS
DKFASFFGNVPIFHIPGRTFPVDVLFSKTPQEDYVEAAVKQALQIHLSGMTGDILIFMPG
QEDIEVTSDQIVERLGDLDNAPPLAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAE
TSLTVDGIMFVVDSGYCKLKVFNPRIGMDALQVYPISQANANQRSGRAGRTGPGQCYRLY
TQSAYKNEMLTTTIPEIQRTNLANVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSMYQLWI
LGALDNTGALTPTGRLMVEFPLDPALSKMLIVSCDMGCSADILIVVSMLSVPSIFYRPKG
REEESDQVREKFSVPESDHLTYLNVYMQWKNNNYSSIWCNDHFIHTKAMRKVREVRAQLK
DIMVQQKMNLISCGSDWDVIRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPTSALFG
MGYTPDYIIYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSIKHAGKSRQENRRRAKAEI
TSMEEEMSMAQEQIKARKEEQERKNNLGSVRAIKICTPGRKEEAPMTPKRTPARFGL
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
atggaagatgatgcatccttgcatcggttagaaggcagtgaccccagggtgcaggtcgga
ggtctcattgtaaagaagaagagcgcttcaacagaacaacatgtgttcagggttccagct
ccacgcacttctctcctgggcttagatctgctggcagcccagaaacgtaaggagcgtgag
ggcaaggaaattctggatgatcagcccaaaaaatctaaggtgtcatcattcaaggattgg
gaggaagggaaaagtgattcagattctgacgatgaaaatcaggaggatggtgacagcaag
aatgtgaagaaagaaaggaagtaccgtgtgactggttccgaaacgccctcaaacccggga
ggggttagtgaggagttcaaacagagacatcaacagagagagaaagacagacgggaacat
ggtgtttatgcatcttccaaagaagacaagagcagggacagagacaggacaagagacaga
gatcaagatcgctcccgtgaccgagagagagagaagagaagagaccgagacgaacgtgaa
agcagtcgagggtccggcagcagtcgctccgagcgtggtgatggcagcgtgaggagtgag
cgatcacagagggaatttggctcggagcgtctcagccgcggcgggcgtagagatgagcct
gaatcgccacgtaacagacacaaagaattggccactccatcgcgctccagctgggatgaa
gatgatagtggttataacagctctcgccactcccattgggagagtccgtctccctccccg
tcccatcgagagagcgagcgctcggagcgcagccatcgctcggtccgagacagcgagagg
aaggacaagtctgttagaggtcaatatccagcggatactcctttaccaactccttcatac
aaatacaacgagtgggctaatgacagaaaacatctgggctccactcctcgcctttctcga
gggaaaggagataaaagagaggatggcgacaatggcatcacatttaatgatgaggatgag
aaagaacagtgggaggaggatcagaggcaagctgatcgtgactggtatatgatggatgag
ggttatgatgagtttcacaaccccctgacgtccagctcagaggagtatgtgaagaaaaga
gagcagatcttacaaaagcagacccagaaacgtatctcggcacagaaacgacagatcaat
gaggataatgaacgctgggagaccaaccgcatgcttaccagtggagtggtgcagcgtttg
gaggtggacgaagattttgaagaggacaatgctgccaaagtccacctgctcgtccataac
cttgtgccacccttcctggatgggaggattgtcttcactaagcagcctgaaccggtcatt
ccagtaaaagatccgacctcagacatggccatcatctcccgcaagggcagtcagctggtc
cgacgccacagagagcagaaagagagaaaaaaggctcagcataaacactgggagctggct
ggcaccaaactgggcgacatcatgggcatcaagaaaaaagaggacggaggcgaggggaac
gctgtaggagaagatggaactgtggattacagaacggagcagaagtttgccgatcacatg
aaggagaagagtgaagccagcagtgatttcgccaagaagaaaacactattggagcagaga
caatatctgcccatatttgccgttcgtcaggagctgctgaacatcatcagggataacaac
attgtgattgtggtgggagaaaccggcagcggtaagacgactcagttgacacagtatctt
cacgaagacggttacacgggttacggcatggtgggctgcacacagccacgcagagtggca
gccatgagcgtggccaaaagagtcagtgaggaaatgaactgtaacctgggagaggaggtg
ggttacgctatccgttttgaagactgtacatcagaaaagacggtgatcaaatacatgacg
gatggtattctcctgagggaatccctgcgggaatcagatctggatcattacagtgccgtc
atcatggacgaagctcatgaacgttcccttaacacggatgtgctgttcggtcttctccga
gaggtggtttctagacgctccgacttgaagctcattgtcacgtcagccaccatggactcg
gacaagtttgcgtcgttcttcggaaacgttcctatttttcacattcccggcaggacgttc
ccagtagacgtcctgttcagtaagactcctcaggaggactacgtggaggcagccgtgaaa
caggccctgcagattcatctcagcgggatgacgggtgacatcctcattttcatgcctggt
caggaggacattgaggtgacatcagatcagattgtggagcgattgggggatctggataac
gctcctcctctggcagtgctgcccatttactcccagttgccctcggacctgcaggccaag
atctttcagaaggctccagatggagtgaggaaatgcatagttgctacgaacattgccgag
acgtctttgacggtggatgggatcatgtttgtggttgattcgggttattgcaaactgaag
gtgtttaatccacgcattggcatggatgcccttcaggtgtaccccatcagtcaggccaat
gccaaccagcgatcaggaagagctggcaggacaggcccaggacagtgttacaggttgtac
actcaaagtgcttataagaacgagatgctcacgaccactattccagagatccagaggact
aacctggccaacgttgtgctgctgctcaagtcgctaggagtgcaggaccttctgctcttt
cacttcatggatcccccgcctgaagacaacatgctgaactcaatgtatcagctgtggatc
ctgggagcgctggacaacactggcgctctgacgccaaccggacgtcttatggtggagttt
cctctggatccggctctgtctaagatgctgatcgtgtcatgtgacatgggctgcagcgct
gatatcctcatcgttgtttccatgttgtctgtaccatccatcttctacagaccaaagggt
cgtgaggaggagagtgaccaggtgagagagaagttctctgtacctgagagcgatcacctg
acttacctgaatgtttacatgcagtggaagaacaacaattactccagcatctggtgtaat
gatcacttcattcatactaaagccatgcgcaaggtgcgtgaggtcagagctcagctcaaa
gacatcatggtgcaacagaaaatgaatctgatctcttgcggctcagactgggatgtgatc
agaaaatgcatctgtgctgcatacttccaccaagcggctaaattaaagggaataggggag
tacgtgaacgtaagaaccggaatgccttgccatctgcacccgaccagtgctctgttcggc
atgggctacaccccagactacatcatctaccatgagctggtcatgactactaaggaatac
atgcagtgtgtgacagcggtggatggtgaatggctggctgagctcgggccaatgttttac
agcatcaaacacgcagggaagagcagacaggagaaccgacggagagccaaggcagagatc
accagcatggaggaggagatgtctatggcacaagaacagatcaaagcacgaaaagaggag
caggagaggaagaacaacctcggcagcgtcagggccataaagatctgcaccccaggacgg
aaagaggaagctcccatgacaccgaaacgaacacctgcacgattcggcttataa
DBGET
integrated database retrieval system
