Misgurnus anguillicaudatus (oriental weatherfish): 129450461
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Entry
129450461 CDS
T09481
Symbol
smarca4b
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
129450461 (smarca4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
manu03021
]
129450461 (smarca4b)
03036 Chromosome and associated proteins [BR:
manu03036
]
129450461 (smarca4b)
Transcription machinery [BR:
manu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
129450461 (smarca4b)
Chromosome and associated proteins [BR:
manu03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
129450461 (smarca4b)
Chromatin remodeling factors
BAF complex
129450461 (smarca4b)
PBAF complex
129450461 (smarca4b)
GBAF(ncBAF) complex
129450461 (smarca4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
HSA
Bromodomain
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
129450461
NCBI-ProteinID:
XP_055069221
LinkDB
All DBs
Position
8:26579649..26597655
Genome browser
AA seq
1656 aa
AA seq
DB search
MSTPEPPLGGTQCPGPSPGPGPSPGTVLGSGLSPGSSHSMMGPSPGPPTSTGHPFPQQGS
AGYNQENLHQMHKSVDENLPEDARFTQMKVVPMRSGHGGLVRPGSPMEQHSQGYPSPLGS
SEHVSSPVSASGPPSGPLLSTSASLEGVDSQTLQQSRPGTQSAGTGSGSATGSSSSPTPF
NQSQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQHGQSLSGLPAAGGGGAGF
SRGHVCAGCSAGMMGPSMPPPGPSGVPSGVQGQNHNGPPKPWPDGPMVNAATPSNASQKL
MPPQPTGRPSPAPPSVPPAASPVMPPQTQSPGHLSHPSQPTTVVPLHQKQNRVTPVQKPC
GLDPVEILQEREYRLEARIAHRIQELENLPGSLPGDLRTKATVELKALRLLNFQRQLRQE
VVVCMRRDTALETSLDAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSI
LQHAKDFKEYHRSITAKMQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYR
KLIDQKKDKRLAYLLQQTDEYVANLTELVRAHKAVQALKEKKKKKKRKKKLENADGQTIA
LGPDGEPLDETSQMSDLPVKVIHVDSGKILTGVDAPKAGQLDTWLEMNPGYEVAPRSDSE
DSGSEEDEEEEEEPPPLLPSQTPADEKKKIPDPDSEDVSEVDARHIIEHAKQDVDDEYGS
ASFARGLQSYYAVAHAVTERVDKQSSLLINGQLKQYQIKGLEWLVSLYNNNLNGILADEM
GLGKTIQTIALITYLMENKRLNGPYLIIVPLSTLSNWVYEFDKWAPSVVKVSYKGSPAAR
RAFVPQLRSGKFNVLLTTYEYIIKDKQVLAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY
LAPRRVLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET
ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG
SEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQQIEESFSEHLGFSGGIVQGPDLYRASGK
FEVLDRILPKLRASNHKVLLFCQMTSLMTIMEDYFAYRNFKYLRLDGTTKAEDRGMLLKT
FNDPASQYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRV
LRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDENNV
LGNQVLKLKECFQEEDEVPDDETVNQMIARSEEEFDQFMRMDLDRRREEARNPKRKPRLM
EEDELPTWIMKDDAEVERLTCEEEEEKMFGRGSRQRKEVDYSDSLTEKQWLKVRRQNACS
QRPSPIHEGLVFLIMCSFVSQAIEDGTLEEIEEEVRHKKTARKRRRGRDADAVPSTSGAQ
RARERDDDLKRQKKRGRPPAEKLSPNPPSLTKKMKKIVDAVIKYKENNGRQLSEVFIQLP
SRKELPEYYELIRKPVDFRKIKERIRSHRYRSLNDLERDVMLLCQNAQTFNLEGSLIYED
SIVLQSVFTSLRQKIEREEESDGEESEEEDEDEGSDSETRSVKVKIKLSRKDRSADHGRG
RRRTARTRAKPVVSDDDTDEEQEEDRSNSASEDEQG
NT seq
4971 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccccagagcccccactaggagggacacaatgtccaggaccctcgccaggtccg
gggccttctcctgggaccgttctgggttcagggctttcccctggatcttcacacagtatg
atgggccccagccccggacccccgacctcaacaggacacccttttcctcaacaaggatct
gcaggatacaatcaggaaaacttacaccaaatgcacaaatcagtggatgagaaccttcca
gaagacgctcgtttcacccagatgaaagttgttccgatgaggagcggacacggcggtctg
gtgcgtcctggaagccccatggagcagcactctcaaggttacccgtcaccgctgggctcc
tcagaacacgtgtccagtcctgtgtctgccagcgggcctccgtcaggtcctcttctgtcc
acctcggcctcattagagggcgtggacagccagactctacagcagagccgcccgggaacc
caaagcgctggaaccggctctgggagcgccacgggttcatcctccagcccgacacccttc
aaccagagtcagctgcaccagctgcgggcacagatcatggcatataagatgctggctcgt
ggacagccccttccagaccacctacagatggcggtccagggcaagcggcccatgccaggc
atgcagcacggacagtctttgtccggtttgcccgctgctggtggaggcggtgctggtttc
agccgagggcatgtttgtgccggctgttccgcagggatgatgggacccagcatgcccccg
cctggaccctccggagtcccgtctggtgttcaaggccagaatcacaatggacctccaaaa
ccatggcccgacggtcctatggttaatgcagctaccccttcaaatgcttctcaaaaactg
atgcccccgcagcccaccggacgcccttcccctgcacccccttctgttccaccggccgcc
tcccccgtcatgccgccacaaacccagtcgccaggtcacctgtctcacccgtctcaaccc
acgaccgttgtccctctgcaccagaaacagaaccgtgttacgcccgttcagaagccgtgc
ggcttggacccggtggaaatacttcaggagagagagtacagactcgaagctcgtattgcc
caccgcattcaggagctggagaacctccccggctctctccctggagatttgcgcaccaaa
gcgacggtcgagttaaaagctctccgactgctcaacttccagagacagctgagacaggag
gtggtggtgtgcatgaggcgagatacggccttagaaacctcactggatgctaaagcctac
aagcgcagtaagagacaatcgctacgcgaagcccgaatcacagagaaattggagaaacag
cagaagatcgagcaggaacgaaagcgcagacagaaacatcaggaatatctcaacagcatc
ctgcagcacgccaaggacttcaaggaatatcatcgttccatcaccgcaaagatgcagaaa
ctgaccaaagccgtggccacgtatcacgctaacactgaacgagagcagaagaaggaaaac
gagagaattgagaaagagagaatgagaagacttatggctgaagatgaggagggttacagg
aaactcattgatcagaagaaggacaaacgtctagcgtatctgctccagcagaccgatgaa
tacgtggcaaacctgacggaacttgtgcgcgctcataaagctgtacaggctttaaaagag
aagaagaagaagaagaagagaaagaagaagctagaaaacgctgatggacagactatagct
ctgggaccagatggagagcccctggatgagacaagtcagatgagtgatcttccagtgaag
gtgatccatgtggacagtgggaagattttgaccggagtggacgctcctaaagccgggcag
ctggacacatggttggagatgaatccgggttatgaagtcgctccacgatcagacagtgaa
gactctggatcggaggaagacgaggaagaggaagaggaacctcctccattgctgccttct
caaactcctgcagacgagaagaagaagatcccagacccagacagtgaagacgtttctgag
gtggacgctcgtcacattatagagcatgctaaacaagatgtagatgatgagtacggcagt
gcttcgtttgctcgtgggttacagtcatattacgccgtggctcatgcagttactgagaga
gtagacaaacaatcatcactactaatcaatggtcaactcaaacaataccagatcaagggt
ttggagtggctggtgtctctgtataacaataatctgaatgggatcctggccgatgagatg
ggtttggggaaaacgattcaaaccatcgctctgatcacgtacctcatggagaacaagcgt
ctgaacggaccgtacctcatcatcgtcccgctctcgactctttctaactgggtctatgag
ttcgataaatgggcgccatcggttgtgaaagtctcttacaagggatctccagccgctaga
agagctttcgtaccgcagctgcgcagcggcaagttcaatgtgctgctcaccacgtacgaa
tacatcatcaaagacaagcaggttttggcaaagattcgctggaagtacatgatagtggat
gaagggcatcggatgaagaaccatcactgtaagctgacgcaggtgttgaacacgcattat
ctggccccgcggcgagtgctgctgaccgggacgccgctgcagaacaaactcccagaactc
tgggcgcttctcaacttcctgttgcccaccatcttcaagagctgcagcacgtttgagcag
tggttcaatgcaccgttcgccatgactggagagaaggtggatctaaatgaggaggagacc
atcctgatcattcgccgcctgcacaaggtgctccgccccttcctgttacgtcgactgaag
aaggaggtggaggcacaactgccggagaaggtggagtatgtgatcaagtgtgatatgtcg
gctcttcagagggtcttgtatcgacacatgcaagctaaaggagttctgctcactgacgga
tctgagaaagacaagaagggtaagggtggcactaagactttgatgaacaccattatgcag
ctgagaaagatttgtaatcacccgtacatgtttcagcaaatcgaggaatctttctctgag
catttgggtttctcgggtggcatcgttcaaggacccgacttatatcgagcttcaggaaag
tttgaggttctggatcgtattttacccaaattacgagcgagcaatcacaaagttctgctc
ttctgccaaatgacatcattgatgaccataatggaggattatttcgcttatcgcaacttc
aaatatctgcgtttggacggcacaactaaagcagaggatcgtgggatgctgctaaagacg
tttaatgatccagcctcgcagtattttatattcttgctgagcaccagggcaggcggactg
ggactcaatcttcaaagcgcagatacggtcatcatattcgacagcgactggaatcctcac
caggacctgcaggctcaggaccgagcgcaccggatcgggcagcagaacgaggtgcgagtt
cttcgtctttgcaccgtgaacagcgtggaagagaagatactggcggctgctaaatacaag
ttaaatgtagatcaaaaggtgatccaggctggcatgtttgaccagaaatcttcaagtcat
gagcgcagagcctttttacaagctattctggagcatgaagagcaagacgagaacaatgtt
ttgggaaatcaagtcttaaagctaaaagaatgttttcaggaagaggatgaggtgccggac
gatgaaactgtcaatcagatgatcgctcgcagtgaagaggagtttgaccagtttatgcgc
atggatttggatcggcgccgcgaagaagcccggaacccaaagcgaaaacctcgattgatg
gaggaagacgagctgcccacctggatcatgaaggacgatgctgaggtggaaaggctcacc
tgtgaggaagaggaggagaagatgttcggccgtggctctcgtcagagaaaagaggtcgat
tacagcgattcgctcacagagaaacagtggctaaaggtcagacgtcaaaacgcctgttca
cagaggccctcgcccatacacgaaggcctcgtgtttttgattatgtgctcttttgtctcc
caggcgattgaagacggtacactggaggagatcgaagaagaagtgcggcacaagaaaacg
gctcggaagaggaggcgcggccgagacgcggacgcggttccttccacctcaggagctcaa
agagcgagagaaagagacgacgacctcaaaaggcaaaagaaacgaggtcgtccgccagca
gagaaactctcgccgaaccctccgtcgctcaccaaaaagatgaaaaaaattgtggatgcc
gttattaaatacaaggagaataacgggcgtcagttaagtgaggttttcattcagctgcca
tcacggaaggagcttccagaatactacgaactcatccgcaaacccgttgacttcagaaag
attaaggaacgcattcgcagtcacaggtaccgcagcctgaatgacctggagagagatgtc
atgctgttgtgtcaaaatgcacaaaccttcaacctggagggttcactgatctacgaggac
tctattgtgctgcagtcagtcttcactagtctgcgtcagaagattgagagagaggaagag
agtgatggagaggaaagtgaagaggaagatgaagatgaaggttcagattctgagactcgg
tcagtaaaggtgaaaattaaattaagccgtaaggacagaagtgcagatcacggcagagga
cgcaggagaacggcgaggacacgagctaaacctgtggttagtgatgacgatacagatgaa
gaacaggaggaggatcggtccaacagtgccagtgaggatgaacagggatga
DBGET
integrated database retrieval system
