Misgurnus anguillicaudatus (oriental weatherfish): 129451654
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Entry
129451654 CDS
T09481
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
manu04147
]
129451654 (col18a1a)
00535 Proteoglycans [BR:
manu00535
]
129451654 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
manu00536
]
129451654 (col18a1a)
Exosome [BR:
manu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
129451654 (col18a1a)
Proteoglycans [BR:
manu00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
129451654 (col18a1a)
Glycosaminoglycan binding proteins [BR:
manu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129451654 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Fz
DUF1554
Motif
Other DBs
NCBI-GeneID:
129451654
NCBI-ProteinID:
XP_073710748
LinkDB
All DBs
Position
17:33495084..33604600
Genome browser
AA seq
1828 aa
AA seq
DB search
MMPGFRMWLCLFVLACMRIQHSHGWFWSGSDGKGTRTPVNLTTLNPTSPSRTEAPPSTAG
TSASVTEVPKVAEKLGMYVRYGDGFEGSAREGGSGLFKSESLSRSELASGSGSSQFESQE
SYVTPTDLSGISVESTNVQMESKVDRMDGHNSSFVERQFNQSIVSLKNNLFGDNSSKHDS
YNTTQYSLEYSVSDNVLTNESDRSVITPRCLEVHSKLPFCTRTGAKSFAVPNFLNQSSVE
EVKVVLSKWASLLRSHCHHSLEWFFCLLLMPRCGPPGLPAPMPCRSFCEVLRDSCWTLLD
EGRLPVECHSLPEEPHDGYQCLSVSNQKEQNGISLLQLIGDPPPDGITEHYGPDNSLGYM
FGPSSNVGQSAAAHLPNPFYRDFSLIFNIKPTSTKPGVIFSITDPSQDFMYVGVKLSEVQ
NDQQDIIFYYTEPDSEKSYEAARFSVPSMLNTWTRFSISILNEKASLYFKCDSDPQVVNF
ERSPDDMDLDAGAGVFVGHASRADPDKFLGVIGDLRVLKDPGAAQRHCEEDEDDYDMTSG
DGPSGYGESETTSVQVTPPSSRPIQQPPVTSVIQQTGSVELSRRISGSHGDSRQTSGSYG
DSRQTGSHGGSRKTSGSYGDSQQAGSHGDSHQTSGSYGDSRQAGSHGGSRKKSGSYGDSR
QAGSHGGSRKKSGSYGDSRQTVSHGGSRQTGSDSDSRQTGSHSDSRQTSGDTGKTHTLVD
ISKQILVSHDVSRQASSTVDHSLRASGSADDGLRYSVESRLGPAGTAGSVGAKGDKGDRG
EKGAKGDRGLVGPKGDSGSASVSGGGSKGEKGEIGEKGMKGGPGFGYPGSKGDRGPPGPQ
GPPGPPGPSAEVEVRGDGSVVERVTGPRGPPGPPGPPGPTGTDGEPGDPGEDGKTGPVGP
PGFPGTPGNTGPKGEKGDRGDGNPGPRGPPGPPGPPGPPTRSDRPTFVDMEGSGFDAENM
RGPPGLQGPPGPPGLPGPPGPESAASGGFGPPGPPGQNGAPGQPGLPGTPGADGKSGLPG
PKGEKGDAGDLGLPGPLGEKGAQGVPGTPGLPGESGLAGLPGPMGPVGPPGPPGPPGPSY
RVGFDDMEGSAFEFGSISGVRGPTGVRGPPGLPGQPGKPGFPGLPGEKGSEGPQGIDGRP
GLDGFPGPQGPKGFKGDQGERGEPGRDGNGLPGPPGPPGPPGQIVYRNSEHYDATGEAGP
QGGSGRPGQAGFPGPMGPKGDRGEPGAPGYGIKGEKGEPGYVLGPDGNPLYPGGLGGIGE
RGIPGPVGPPGPVGPPGPKGEFGMPGRPGRPGVNGYKGEKGDPGSGSGYGYPGQPGPPGP
PGPPGPAAPLDRFRYEDFVRQYTATKGEKGEQGLPGVPGTPGFTSDIDIYTLKNEMKGER
GEPGPRGEKGEPGGGFYDPRFGAIAGPPGNPGLPGPKGDSITGPPGPQGPPGPPGVGYDG
RPGNPGPPGPPGPPGSPSLPGPYRPSLSIPGPPGPPGPPGIPGHGTGVTVLRSYDIMLAT
ARRQTEGALIYIMDRSDLYLRVQNGVRQVMLGDYKPFYVDLDNEVAAVEPPPVVPYSQDH
TANNGAEQISPPHQPVDLPRESENRNPSPPETFYPEPQYPPLPDPRYPPNTDSRYDSGQS
PIRYPERYPVTPPRRPSPPVNQPEGHTHTSGPGLHLIALNSPQVGNMRGIRGADFMCFQQ
ARAVGLKGTFRAFLSSKLQDLYSIVRRSDRDTLPIVNLKDQVLFRSWESLFSDSESRMKD
GASIYSFDGRDVLRDSAWPEKMIWHGSNGKGHRQTDNYCETWRTGDRAVTGLSSSLQTGQ
LLHQTPSSCSSSYIVLCIENSYMSQFKK
NT seq
5487 nt
NT seq
+upstream
nt +downstream
nt
atgatgcctgggttcaggatgtggctgtgcctttttgtactggcgtgcatgaggattcag
cactcacatggatggttctggtctggttctgatgggaagggcacacggacaccagtcaac
ctgactactttaaaccccacatcaccatcaaggacagaagcaccacccagtacggcaggt
acaagtgcttctgtgaccgaggtccctaaagtggccgagaaattaggtatgtatgtgaga
tatggagatgggtttgaggggtctgctagggagggtggctctggattatttaagtctgaa
tctttaagtaggtctgaacttgcttctggatctggatcttctcagtttgaaagccaggag
agctatgttacaccaactgacttgtcgggcatttcagttgagagtactaatgtgcaaatg
gagagcaaagtggatcggatggatggacacaacagcagttttgtagaaaggcaatttaac
caaagcattgtttctttaaaaaataatttatttggggataattcttctaagcatgatagt
tataacacaacacagtattcccttgaatactctgtctcagataatgtactaaccaatgaa
agtgaccgatctgttataaccccacgctgcttggaagttcattccaaattgccattttgc
accagaacaggagcgaagagtttcgcagtgcctaattttctaaatcaaagcagcgtggag
gaagttaaggtggttttaagcaaatgggcgtcgctgttacggtcacactgccaccatagc
ttggaatggtttttctgcttgctgttgatgccgcgatgcggcccacctggactgccggcc
ccaatgccctgtcgcagtttttgcgaggtcttgcgcgacagctgttggacgctgctggat
gagggccgcctccccgtggagtgccattctctgcctgaagagccgcatgatgggtatcag
tgcttgtcagttagtaaccagaaagaacagaacggtatatcactgttgcagttaatcggt
gatcctccaccagatggcatcactgaacactatggccccgataacagccttggctacatg
ttcgggccgagctccaacgtgggccaatcagctgcggcccacctccccaacccattctac
cgcgacttctcactgatcttcaacataaaacctacatccacaaagcctggcgtcatcttc
tccatcaccgacccctcccaggacttcatgtatgttggtgtaaagttgtcagaggttcag
aacgaccagcaggacatcatcttttactacaccgagccggattcggaaaagtcttacgag
gcggccaggttctccgtgccatccatgctgaacacctggacgaggttttccatcagtatt
ctcaatgaaaaggcatcgctgtacttcaagtgtgactcggacccacaagtggtcaacttc
gagcggtccccagacgacatggacctggatgctggggccggagtgtttgttggtcatgcc
agtagagcagatcctgataagtttctgggtgtaatcggggatctcagggtgttgaaagac
cccggggcagctcagcgtcactgcgaggaagatgaggatgactatgatatgacatcaggt
gatggaccaagtggctatggggagagcgaaacaacatcagtccaggttacacctccatcc
tctcgaccaatccagcagccaccggtgacctctgtaatacagcagacaggctctgttgaa
ttatctcgccgaatttctggctcacatggtgattctcgccaaacatctggttcatacggt
gattctcgacaaactggttcacacggtggttctcgaaaaacatctggttcatacggtgat
tctcagcaagctggttcacacggtgattctcatcaaacatctggttcatacggtgattct
cggcaagctggttcacacggtggttctcgaaaaaagtctggttcatacggtgattctcga
caagctggttcacacggtggttctcgaaaaaagtctggttcatacggtgattctcgacaa
actgtttcacatggtggttctcgacaaactggctcagacagtgattctcgacaaactggt
tcacacagtgattctcgacaaacatctggtgatactggaaaaacccacaccttagttgat
attagcaagcaaattttagtgtcacatgatgtttctagacaagcttcaagcacagttgac
cactctctgagagcttcaggctcagctgatgatggcttgcggtattctgtggagtccaga
ctcggtcctgcaggtacagcaggttctgttggtgcaaaaggagataaaggtgacagagga
gagaagggggccaaaggtgaccggggccttgtgggaccaaagggtgattcggggtctgcc
tctgtgtctggtggaggatcaaagggagagaagggcgaaataggagaaaaaggcatgaag
ggcggtcctggttttggttatcctggatcaaagggagaccgtggccctcctggaccccaa
gggcctcctggtccaccagggcccagtgcagaggtagaggtgagaggtgatgggtcagta
gtggagagggtgacgggaccaagaggaccacctgggccaccaggacccccgggacctacc
ggaactgatggggaaccgggtgaccctggtgaagatgggaagacgggccctgttggacct
cctggttttccaggaactccggggaatacaggacctaaaggagagaaaggtgaccgaggt
gatggtaatccaggaccccgtgggcctccagggcctcctggccctccaggacccccaact
cgctctgacagacccacatttgtggacatggagggttctggttttgatgctgagaatatg
cggggaccgccaggtttgcaaggtccacctggtccacccggcctccccggaccccctggc
cccgaatctgcagcgtctggtggtttcgggcctcctggtccacccggtcaaaatggtgct
ccaggtcaaccgggacttccaggtactccaggtgctgatggaaaatcaggtttacctgga
ccaaaaggagaaaagggtgacgccggtgatctgggtttacctggacctctgggagagaag
ggtgcccaaggtgttcctggtacccctggtcttccaggagagagtggacttgctgggctt
ccaggaccaatgggacccgttggaccaccgggaccacctggtcctcctggcccaagttat
cgtgttggttttgatgatatggaaggctctgcttttgaattcggttcaatttctggtgta
agaggacctacaggagtgcggggacctcctggtctgccaggacaaccaggtaagcctggt
tttccaggacttcctggtgagaaaggcagcgaagggcctcagggaattgatggacggcct
gggttggatggctttcctggaccacagggaccaaaggggttcaaaggagaccaaggcgaa
agaggtgaacctggtcgagatgggaatggtcttcctggtccacctggtcctccaggacca
cctggccagattgtttatcggaatagtgaacattatgatgcaactggagaagcagggcct
cagggagggtccggtcgtccaggtcaagcaggtttccctggcccaatgggaccgaaaggt
gacagaggtgaacctggagcaccaggttacggcattaagggagagaaaggagaacctgga
tatgttctcggacctgatggaaacccactttaccctggtggattggggggcattggcgag
agaggaattcctggaccggttggacctcctggaccagttggacctccaggtccgaagggt
gaatttggaatgccaggcagacccggccgtccaggtgtgaatggttataaaggtgaaaaa
ggagatccaggttcaggttctggatatggctatccgggtcaacctggtcctccaggacct
cccggtccccctggacccgctgcacctttggatagattcagatatgaagattttgttaga
cagtatacagctacaaaaggagagaaaggagaacagggtcttcctggcgtacctgggacc
ccaggttttacatctgatattgacatctatactcttaagaatgagatgaaaggagaacgt
ggcgagcctggtccaagaggagagaaaggagaaccaggtggtggattttatgaccctcgg
tttggagctatagcagggccaccaggaaaccctggacttcctggacctaaaggagactct
atcacaggcccacctggacctcagggcccacctggaccacctggggttggttacgatggg
cgtccaggaaacccaggacctccaggaccccccggtcctccagggtcgccatcattgcca
gggccctacagaccatcactcagtattcccggacccccaggtccgccaggccctcctgga
atccccggacatggaactggggtgactgtgctcaggtcttatgacatcatgctcgcgaca
gcacgcagacaaacagaaggagccctcatatatattatggacagaagtgacctttacctc
agagttcaaaatggagtcagacaagtgatgcttggagattataaacccttctatgtagat
ctggataatgaggtggcagcagttgagccaccccccgttgtcccgtattcccaggaccac
acagccaacaacggagcagagcagatttctccaccacaccagcctgttgatttgccgagg
gagtcagagaacagaaacccgagtccacctgaaaccttctacccagaaccgcaatatccc
cctctgcccgaccctagatacccacctaacaccgacagcaggtacgattccggccaatca
cctatcaggtaccctgaaagataccccgtgactcctcctcgtcgtcccagcccgcccgtc
aaccaaccggaaggccacacgcacacatctggacctgggttgcatcttattgctctaaac
tctccacaagtgggcaacatgagaggcattcgtggggcggatttcatgtgcttccagcag
gctcgggccgtgggtctgaagggaacattcagagcattcctttcctccaaactccaggat
ctctacagcatcgtccgcagatctgaccgagatacgctaccaattgttaatcttaaggat
caagtgctgttcagaagctgggagtctctcttcagtgattcagagagcagaatgaaggac
ggtgcttccatttactcatttgatggtagagatgtcctgagggacagtgcctggccagag
aagatgatctggcacgggtctaatggcaagggtcaccggcagacggataactactgcgag
acatggaggactggagaccgagcggtgacaggcttgtcctcatctctgcagacgggtcaa
ctccttcatcagacacccagcagctgttccagttcctacatcgtcctctgcatcgagaac
agctacatgtcgcagttcaagaaataa
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integrated database retrieval system
