Misgurnus anguillicaudatus (oriental weatherfish): 129452427
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Entry
129452427 CDS
T09481
Symbol
ifih1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu04622
RIG-I-like receptor signaling pathway
manu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
129452427 (ifih1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
129452427 (ifih1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
manu04054
]
129452427 (ifih1)
Enzymes [BR:
manu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129452427 (ifih1)
Pattern recognition receptors [BR:
manu04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
129452427 (ifih1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
CARD_2
RIG-I_C
DEAD
ResIII
Helicase_C
SWI2_SNF2
CARD
DUF3638
Motif
Other DBs
NCBI-GeneID:
129452427
NCBI-ProteinID:
XP_055072251
LinkDB
All DBs
Position
17:complement(40113810..40150167)
Genome browser
AA seq
996 aa
AA seq
DB search
MNCDQDVATCHVLDCYRDRLKRLIKVEPLLDLLSFLEPQQKDRINAKIGRDGDMSAVSLL
IDEIIKKRDVIGWSRELITALETVGCKQAANYVDNKPPEPTEEEQNDSCVRLIDLMRLSL
VNMKTRDVSTHCATMGLLTQEDMENITTAIDGKGNTYGARLLLTRLVKNEPGWFSKFLKA
LEDTEHYDLARELRGEPCNEDEPMSVDTFKTRTMEESEQSCAAAPEEMETDSIIPPALSA
NSSLLSDDLDSSMDNNNSSLETSALSTTVTEEADMYLDGQQKEEEDLAEDTDQSASNGNI
VLRDYQMEVARLALEGKNIIVCLPTGSGKTRVAVFITKEHLESRKRMGEPGKVVVLVNKV
PLVEQHYKAEFGKFLQHKYSVKPVSGASQLKISFPQIVEQNDIIICTAQILENSLAKAKN
GDEDGVKLSQFTLMVIDECHHTQKGGVYNHIMIRYLKQKHRNQQLVKQQKDPVPIPQILG
LTASPGVGGAKTQQKAEEHILQICGNLDAFTIKTKNSEEEPKKPYKRIAIAEERKEDPFG
DVIKKIMDEIHTHAELKPLCEPGTQNYEQWVVQKEQNAAKEENQKVRVCAEHLRQYNEAL
HQSNTLRMSDAFCFLDKYHTEELKTKSTPDSEDNITITDTERFLFNLFKDKKAKLQELMG
KPQYENNILAQLKANILKEFSSREKARGIMFTQTRLSAIALCQWIQENPKFDEIGVRAKY
LIGGGDQSLVKPMTPAEQRDVLNKFHEGEINLLIATTVAEEGLDIADCNFVIRYGLVTNE
IAMIQARGRGRAEDSSYTLVAESGSGVAERESVNEYREKMMSKAIAKVCKMNRADYEKKI
KEFQTQAILEEKLKTKKKQQKGMIKEPPSQISLSCRQCAVFVCSGEDIEIIENMHHVNVS
ETFSTLFIRRENVSLQERQLDYETNGVIACKKCGGPWGSMMLYKSMECPCLHIKNFVVTY
KSKKKTYNKWTELPIHFSSFDYTQHADLGDEDSDIE
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atgaactgcgatcaggacgtcgcgacatgtcacgttctggactgttacagagacagacta
aagcgtctgatcaaagtcgagccgcttttggaccttttgagtttccttgaaccgcagcag
aaggatcggataaacgccaagataggtagagatggggacatgagcgcggtatctcttctt
attgacgaaattattaaaaaacgtgacgtcattggctggtcgcgggaactgatcactgca
cttgagactgtcggttgtaaacaagcagcgaattatgttgataataaaccgcccgagccg
acagaagaggagcaaaacgacagctgtgttcggctcatcgatctgatgcgactgtcgctg
gtcaacatgaaaacacgcgatgtgtccacgcactgcgccactatggggctcttaacacag
gaggacatggaaaatataacaactgccattgacggtaaaggcaatacatatggcgctcgt
ttgctcctcacgcggctggtcaagaatgaacctggctggttttccaaattcctgaaggct
ctggaggacaccgagcattacgacctagcacgtgaactgagaggagagccgtgtaatgaa
gatgaacctatgtctgttgacacctttaagacgagaacaatggaagagagtgaacagtca
tgtgcagccgctccagaagagatggaaacagactccatcatccctccggctctctctgcc
aatagctcacttctgtcggacgatctggacagcagtatggacaacaacaacagcagtctt
gagacatcagcactttccaccactgttactgaagaggctgatatgtacttagatggtcaa
cagaaagaggaggaagatcttgcagaggacaccgatcaatctgcgagcaatggaaatatt
gtgctacgtgactatcagatggaggtggccagactagcgctggaaggcaagaacatcatc
gtctgcctcccgacaggaagcggtaaaaccagagttgctgtgttcatcactaaggaacat
ttggagagtcggaagcggatgggagagcctgggaaagtcgttgttctggttaacaaggtg
cccctggttgagcagcactacaaggccgagtttgggaagtttctacagcacaaatactct
gtgaaaccggtcagtggtgcatcgcagctcaaaatctccttcccacaaattgtggagcaa
aatgacatcatcatctgcacggcacagattctggaaaactccttggccaaagccaagaat
ggcgacgaggacggagtcaaattatcgcagtttaccctgatggtcattgatgaatgtcac
cacacgcagaagggcggtgtgtataatcatatcatgattcgctacctgaaacaaaaacat
cgaaaccagcaactggtgaagcagcaaaaagacccggttcccattcctcagattctgggc
ctgaccgcctcacctggtgtgggaggagccaaaacccaacagaaagcagaagaacacatt
ttacagatctgcggaaatctggacgcctttacaattaaaacaaaaaattctgaggaggag
ccaaaaaagccttataaaaggattgcaatagcagaagagaggaaggaggatccatttgga
gacgtcatcaaaaaaattatggatgaaatccacacacatgccgagctgaagcctctctgt
gaacctggcacacaaaactatgaacaatgggttgtacagaaagagcaaaatgctgctaaa
gaagagaaccagaaggtccgcgtgtgtgcagagcatctccgtcaatacaacgaggctctt
catcagagtaacaccctacgcatgtcagacgctttctgctttctcgacaaatatcacaca
gaagagctcaagacaaaatccactcctgatagtgaagataatattacgatcacagacaca
gagcgattcctcttcaatttgtttaaagacaaaaaagcaaagctgcaggagctgatggga
aagccgcaatatgaaaataatattctagcgcagctaaaagcaaacatcctgaaggaattt
agcagcagggagaaggcgagaggcatcatgttcacacagactcgtctcagcgccatcgcg
ctctgccaatggattcaagaaaaccccaagtttgatgaaattggagtcagagccaaatat
ctgattggtggaggagatcagagcctggtgaaaccaatgacccctgcggagcagagggat
gtgttaaacaagtttcacgaaggtgagattaacctgctgatcgccaccactgtggcagaa
gaggggctggacatcgcagactgtaattttgtcatacgctatggcctcgtgaccaatgag
atcgccatgattcaggccagaggtcgagggcgagctgaggacagcagttacacgctagtg
gccgagtcgggatctggcgtggcagagagagagagcgttaatgaatacagggagaaaatg
atgagcaaagccatcgccaaagtgtgcaagatgaatcgagccgactatgagaagaaaatc
aaagagtttcaaacccaggccatattggaggagaagctcaaaacgaagaagaaacagcag
aagggaatgataaaagaacctccatctcaaatcagtctgagctgcagacagtgcgctgtg
tttgtttgctctggagaagacattgagatcatcgaaaacatgcaccatgtcaacgtcagc
gagacgttcagcacgctgtttataagacgagagaacgtctcactgcaggagagacagctg
gactatgagaccaacggcgtcatcgcatgtaaaaaatgtggagggccgtggggttcaatg
atgctgtataaaagcatggagtgtccctgtctccacatcaagaactttgtggtcacatac
aaatctaagaagaaaacgtacaacaaatggaccgagctgcccatacacttctcttcattt
gattacacgcaacacgcagatctcggggatgaggacagtgacattgaatga
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