Misgurnus anguillicaudatus (oriental weatherfish): 129453696
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Entry
129453696 CDS
T09481
Symbol
slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
129453696 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
manu04121
]
129453696 (slx4)
03400 DNA repair and recombination proteins [BR:
manu03400
]
129453696 (slx4)
Ubiquitin system [BR:
manu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
129453696 (slx4)
DNA repair and recombination proteins [BR:
manu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
129453696 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
HTH_10
Motif
Other DBs
NCBI-GeneID:
129453696
NCBI-ProteinID:
XP_055074005
LinkDB
All DBs
Position
23:complement(7072052..7087425)
Genome browser
AA seq
1629 aa
AA seq
DB search
MDDSDQDFTDLCSRLLKRVRRKGAGDEKKPTSRDEEASSSSPCKNPPKRRKKTIKGIKTE
IKSNTTQVGDVSQPALVVPGTVKAKDAVLQRMQQFKRASPEKLLHVDTNQPITTEPNGNL
QHTDDVSSDEALALQLQQELDRESQADEDGGLFFCQLCQKDLTAMSPELRTQHINRCLDA
VEVSAPSASHPSHPRPHVPACPICGKCFKSEKSRSVHLKRCSSDLGVSPNDLLQALRRQA
RETVSDGTTDHSRQVCVTKRRNGVPTKKKSKRKGQQIDEDTMVAMALSRSLLEQEREKQR
EMEEEREIQAQLSSPPPKVAPLLQWRPAAGKGRGKRRKGAFPAQPPLLLIQDPQTALNRL
QERVSSLLLTSRPPSPPTPTLSPSALPVSSHAPLWLKSTLHGGGPDSGLEFYTSELSNFI
QPLITPEMEKLKSVEVTPVKELPSSSLETGQKKCTGQSPAQHRSAPSPFTTSSGTPGTQA
LQDLMELAEEGMTLTQYGYTVHTATDKEDPANELPSSGFVPETNRIKTTSVSVSKLASDL
SSMVNNPQLSDVQLQVDSGDVFFTHSFMLYTRCPLLANMVHDSGFGVEEEGMPAAQRVLL
GDVPGAAVLALLQYLYTAHCPLTYTLLPHVQQFANRFCLPELQQQCEDYSGRSEEDPKDS
DGMFPAQEPHLKDQEDQNLAESNFLELLQSMWQHEDSEGEDEFKENSIGVQEEAVGEFKD
ERVDEEELDEIYEFAATQKKMETATETEDDEADANKPIGNEKNETLSERSVTSLHSNEQG
VDGTEAVMVTSPAEIHQIPNPDTGRPEVSLLSESNAHGNANLDKSYDRLFSQSVGEYTEP
TKTPTSLQQQDYKSSLQPNTTLFRPSCVSEVIDLSISPPPSSDVSGVSSFPVPGVSPVPD
DGEDAGQPENQNTENPPESHSKQVELIVLSDSDEEMVVDHISAIIKPEEDGVTPQSPTKS
LSESKSKGTQNSFTSASQGHTGKVIDTEADQSEHPDVTNESAFDGSAEVSWLIPATPVQV
RSSSAQTCVSMRRTQLFPKSCSSSSSSSSSSAIDRSKPSAHLSSSSIPEPKQDQSPALGY
QTPLHNLRLSQITSKLPSDGSHTGIIIGSCVPQPSSSTPLHLDSSLQRNIPFGSPLDCKV
NSNFSLSQVKEGLLSLQLSHSESSPSPSKTPEKKQNIGGSSDSQSYDPGKSRENRDEELK
TMEVISSPSETPEKKQNIGGSLDSLSYDPDRSRENRDEELKTMEVINKDQNQDVVGVLGV
AQASFCDLDEPPIAFDDSWGLDGVLESQKPCFSLKLNSSNSTASPPSTKHTARLPITPPL
ATGAHTETPEPSPAGQFNHSLPDPDMWDDWEENEEPPLPLSQRLAPPSAKRVAELKTPVA
CRNQNKGPLVPITPMPGFSDMDTPELKNKLNRFGVRPLPKKQMVLKLKEIHQYTHQLQSS
ESEEEMSPLRHLPCTSKSVQLFKQPTAPPAASPVKLQPNDADDHLSSSQNSTTSSNADSD
RSNPELCASEDDDSDTEGITASQAVVREKDKILAVRQFIMSDPKLYKRVLQYQPLPLGEL
QASLKAAGIRLGAGKLLDFLDSQCITFSTAKQGQSTTSRRKQRRKAATNGHAGTAGRGRK
KTAKPHGVA
NT seq
4890 nt
NT seq
+upstream
nt +downstream
nt
atggacgactcagatcaggatttcaccgacctctgctctcgtctcctgaaacgagtgaga
cggaaaggagcaggagatgagaagaagccaacatccagggatgaagaggcatcctcctcc
tctccatgcaaaaatccccctaagaggagaaaaaagactattaagggaattaaaactgaa
atcaagagtaacacgactcaggtgggtgatgtttcacagcccgcccttgttgtaccagga
acagtaaaggcgaaagatgcagtgctccagaggatgcaacagtttaagagagccagtcca
gagaaactcctgcatgtggacaccaaccagcccataactacagaacctaatggaaacctc
cagcacacagatgatgtgagcagcgatgaagctctggctcttcagcttcagcaggagttg
gatcgtgagtctcaagctgatgaagatggaggcttgttcttctgccagctttgtcagaag
gatctgacagccatgagtcccgagctccgcactcaacacattaacagatgtctggatgcg
gttgaggtcagcgctccttctgcatcccatccttctcatccccgaccacatgtcccagca
tgccccatttgtggaaagtgttttaaatctgagaagagtcggtctgttcatctaaagcga
tgctcgagtgatttgggtgtgtcgcctaatgatctgctccaggctttgaggaggcaggct
agagagaccgtgagtgacggcaccactgaccactcccgacaagtttgtgtcacaaagagg
aggaacggtgtgcccacaaaaaagaaatctaaaaggaaaggccagcagatagacgaggac
accatggtggcgatggctctgtctcgctctctacttgagcaggaaagagaaaagcagcga
gagatggaggaggagagagagatacaggctcaactatcaagtcctcctccaaaggtggct
cctttgctacagtggagaccggcagccggaaagggacgtggaaagagaagaaagggtgcg
tttccggcacagccacccctgcttctcatacaggaccctcagacagccctgaaccgtcta
caggagcgcgtctcctctcttctgctcacttcgagacctccctctccgccaacacccacc
ttatccccatccgccctccctgtcagttctcacgctcccctttggctcaaaagcacactg
cacggtggaggaccagactcgggtttagagttttacacttctgaactcagcaactttata
cagccattaatcacaccggagatggaaaagctaaagtctgttgaagtcactccagtaaag
gaacttccatcatcatccttagaaaccggacagaaaaagtgtacgggtcagagcccggcg
cagcaccggtcagctccgtctcctttcacgacaagttcgggtacaccaggcacccaagct
ctgcaggacctgatggagctggcggaggagggcatgacactcacccagtatggatacacc
gtgcacacagccacagataaggaggatccggcgaatgaacttccttcaagcggttttgtt
ccagagacaaatcgcatcaagaccacctcagtgtctgtttcaaagctcgcatcagatctg
agcagtatggtgaacaacccacagctgagcgatgtacagttacaggtggacagtggagat
gtcttcttcactcactcctttatgctgtacacacgatgccccctgctggccaatatggtt
catgactctggttttggagttgaggaggagggtatgcctgccgctcagagggtgttgttg
ggtgacgtacccggcgcggcagtgttggccctcttgcaatacctttacactgctcactgt
cctctcacatacacactgctgccacatgtacaacagtttgctaataggttttgtttgcct
gagctgcagcagcaatgtgaggattactctggacgcagcgaagaagacccgaaagactcc
gacggcatgtttccagcccaggagcctcatctcaaagaccaagaagaccagaacctagca
gagagcaacttcttggagcttctccagtcaatgtggcaacatgaggacagtgaaggagag
gatgaatttaaggaaaattcaataggtgtgcaagaggaagctgtcggagagtttaaggat
gagagggtggacgaggaggaactcgatgagatctacgagtttgccgcaacccagaagaag
atggaaactgcgacagaaacagaagacgacgaggcagatgcgaacaaacccatcggtaat
gaaaagaatgagacattatctgagaggtccgtcaccagtttacatagtaatgagcaaggt
gtggatgggacagaggctgtcatggtaacaagtcctgcggagattcatcaaatcccgaat
ccagacactggaagacctgaagtttctttgctttcagaatcaaatgctcatggaaacgca
aatctagacaagagttatgaccgtttgttttcccaatctgtgggggaatacaccgaacca
acaaagacaccaacatccctccagcaacaagattacaagtcatcactacagccaaacaca
actttatttcgcccctcgtgtgttagtgaggtcattgacttgtctataagccctccacca
agctcagatgtgtcaggtgtatcttctttccctgtacctggtgtgtctcctgttccagat
gatggtgaagatgcaggccaaccagaaaaccaaaatacagaaaaccccccagaatcacac
agcaaacaagttgaactcattgtactgtctgattctgatgaagaaatggtggtcgaccac
atttctgctatcattaaacccgaggaggatggtgtgacccctcagtcccccactaaatct
ctttcagagtccaaaagcaagggtacacaaaacagtttcacatctgcatcccaaggccat
actggcaaggtgattgacacagaagctgaccaatcagagcaccccgacgttactaacgaa
agtgcattcgatggctctgccgaagtttcctggctcattccggccaccccagtacaagta
cgcagcagctccgctcaaacctgcgtcagtatgcgccgaacccagctcttccccaaatct
tgctcttcatcgtcatcttcatcatcttcttccgccattgaccgctcaaaaccctctgct
cacttgtcttcctcaagcatcccagagcccaagcaagatcagagtcctgctttaggttac
caaacaccccttcacaatctcagactgtctcaaatcacatccaaacttccatccgatggc
tcccacactggtattatcattggatcatgtgtcccacaaccctcaagtagcaccccactt
catttagactcttctctacaaaggaacatcccattcggttcccctttggactgtaaagtt
aacagtaacttctctctgagccaggtgaaagaaggcctgctgtctctccaactcagtcat
tcagaaagttctccatctccttctaaaaccccggagaagaaacaaaatattggtgggtcc
tcagactctcagagttatgatccgggcaagtcaagagagaaccgggatgaagagttaaaa
acaatggaagtaataagttctccttctgaaacaccagagaagaaacaaaatattggtggg
tccctagactctctgagttatgatcccgacaggtcaagggagaaccgggatgaagagtta
aaaacaatggaagtaatcaataaggaccaaaaccaagatgttgtaggagtgttaggtgtt
gcccaagctagtttttgcgatttggatgagcctcccatagcgttcgatgactcgtggggt
ttagatggagtgctggaaagccaaaagccttgctttagtctaaaactcaacagcagtaat
agtacagcgagcccaccgagtacaaagcacacggcacgcctacccatcacacctcctctg
gctactggagctcataccgaaaccccagagccgtcaccggcaggtcaatttaatcacagc
ttacctgaccctgacatgtgggatgactgggaggagaatgaggaaccaccacttcctctt
tcacagagattagcgcctccctctgcaaagagagtcgctgaactcaaaacaccagtggct
tgtcgaaatcaaaataaaggacctttggtacccatcactcctatgccaggcttctccgat
atggacacacctgagctgaaaaacaaactcaacaggtttggtgtgcgtccgctgcctaaa
aagcagatggttctgaagctgaaggagatccatcagtacacccaccagctgcagagctca
gaatccgaggaggagatgtctcctctccgacacctcccgtgtacctccaaatccgttcaa
ctctttaagcagcctacagcgccccctgccgcctctccagttaaactgcaaccaaatgat
gcagatgatcatttatcatcctcgcagaactccaccacttcttcaaatgcagactcggac
aggtcaaatccagagctgtgcgcgtctgaagacgatgactctgatactgaaggtattaca
gcgtctcaggctgtcgtgcgtgagaaggacaaaatccttgccgttcgacagtttatcatg
tctgatccaaaactgtacaaacgggtgttgcagtaccagcctctacctctgggagagctg
caggccagtttgaaagcagcgggcatcaggttgggtgccggcaagctactagacttcttg
gactcgcagtgtattacgttcagcacggccaaacagggtcaaagcaccacttcacgaagg
aaacagagacgtaaagcagcgaccaatggtcatgctggtacagctggaaggggaaggaag
aaaacagccaagccacatggagtagcatga
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integrated database retrieval system
