Misgurnus anguillicaudatus (oriental weatherfish): 129454541
Help
Entry
129454541 CDS
T09481
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu03013
Nucleocytoplasmic transport
manu03015
mRNA surveillance pathway
manu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129454541 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
129454541 (ddx39b)
03015 mRNA surveillance pathway
129454541 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
manu03019
]
129454541 (ddx39b)
03041 Spliceosome [BR:
manu03041
]
129454541 (ddx39b)
Enzymes [BR:
manu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129454541 (ddx39b)
Messenger RNA biogenesis [BR:
manu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
129454541 (ddx39b)
Spliceosome [BR:
manu03041
]
Complex C
Other components
EJC/TREX
129454541 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
129454541 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
129454541
NCBI-ProteinID:
XP_055075074
LinkDB
All DBs
Position
20:complement(12808995..12831894)
Genome browser
AA seq
436 aa
AA seq
DB search
MMTENDVDSELLDYEEDEVDAGGVGDAGLGHNEGIISIRKEGVKGSYVSIHSSGFRDFLL
KPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTG
QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLPIKKDEEVLKRESPHVVVGT
PGRILALSRNKTLNMRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLS
KEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVI
FVKSVQRCIALAQLLVEQNFPAIAIHRAMPQDERLARYQQFKDFQRRILVATNLFGRGMD
IERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDARTLNDVQDRFEVNIS
ELPDEIDISSYIEQTR
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgatgactgaaaacgacgttgacagcgagcttctcgactacgaggaagatgaggtggat
gcgggtggtgttggtgacgcggggttaggacacaacgaaggcatcatatccatcaggaag
gagggggtcaaggggtcatacgtgtccatccactcttcgggatttagagatttcctttta
aaaccagagctcctgagagccatagtggactgtggctttgaacatccatcagaggttcag
cacgaatgcattccgcaggcgatattgggaatggatgtattatgtcaggccaagtctgga
atgggtaagacggctgtctttgtgttggccacccttcagcagctggagccagtgactggt
caggtgtcggtgttggtgatgtgccataccagagagttggcgttccagatcagcaaagag
tatgagcgattctccaaatacatgcccaatgtcaaggtggcggtgttttttggtggtttg
cccataaagaaggatgaggaggtgttgaagagagagagccctcacgtggtggtgggcact
cctggtcgtattttagctctgtctcgcaacaagactctcaacatgcgtcacatcaagcat
ttcatactggacgagtgtgacaagatgctggagcaacttgacatgcggcgcgacgtccag
gaaatctttcgcatgacacctcacgagaagcaggtcatgatgttcagtgcgactctaagc
aaagagatccgccccgtctgcagaaagttcatgcaagatccgatggaaatttttgtggac
gacgagaccaagctgacgcttcacggcctccagcaatactacgtcaagctgaaggacaac
gagaagaacaggaaactcttcgatctactggatgttttggagttcaaccaggtggtgatc
ttcgtgaagtccgtgcagcgttgcattgctctggctcagttgctggtggagcagaatttc
cctgccattgctattcacagagcaatgcctcaagatgaaagactagctcgatatcagcaa
tttaaggatttccaaagacggatcctggtcgctacaaacctgttcggccgaggtatggac
atcgaaagagtcaacattgcctttaactacgacatgcctgaagattcagacacataccta
cacagggtggcgagagctggcaggtttggaacgaaaggcctggccatcacctttgtgtca
gatgagaccgacgctcggactttgaatgacgtccaggacaggtttgaggtgaacatcagt
gaacttccagatgagattgacatctcgtcatatattgaacaaacacgataa
DBGET
integrated database retrieval system
