KEGG   Misgurnus anguillicaudatus (oriental weatherfish): 129454851
Entry
129454851         CDS       T09481                                 
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b isoform X1
  KO
K11649  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
manu  Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:manu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    129454851 (smarcc1b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:manu03021]
    129454851 (smarcc1b)
   03036 Chromosome and associated proteins [BR:manu03036]
    129454851 (smarcc1b)
Transcription machinery [BR:manu03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     129454851 (smarcc1b)
Chromosome and associated proteins [BR:manu03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    129454851 (smarcc1b)
   PBAF complex
    129454851 (smarcc1b)
   GBAF(ncBAF) complex
    129454851 (smarcc1b)
SSDB
Motif
Pfam: SWIRM-assoc_2 SWIRM-assoc_1 SWIRM Myb_DNA-binding SWIRM-assoc_3 Myb_DNA-bind_6 DUF919
Other DBs
NCBI-GeneID: 129454851
NCBI-ProteinID: XP_055075398
LinkDB
Position
20:complement(25840959..25853003)
AA seq 948 aa
MATHSLGSTAAGPGITQTSCSSSLSRKTDGGPCCKFWESPETVSQMETVRSWIGKHYKKY
VQADAPSSKSLCGLVIQLLQFQEDSFGCRANNPDFTKLPAKCFLNTRPGGALCHILGSVY
KFKTEQGWRRFDLQNPSRVDRNVEMFISIENTLIQNNLLSRPVVYLSPDFEQKQTVKLKD
IILRHQGTVTEDRSQATHQIYPSLSTADEEEWFRPVMRLDRQVMVHWGMCPDSYDSVVSA
SDVNGEVEEPPNPDKCWKVHAKWVFDTDTFNEWMNEEDYAVNENGNSVSFRRRIYQTEEK
EPKFWKKRRRSLSPSSSESRKKGGKKGSYKKRGQPEDPEPEEDLTKDMEDPTPVPNMEEV
ILPKNVNLKKDSENTPVKGGIMADLDDQEEDLLSGVRDEDEQREFSRGMEGEESATEQIH
HIIIPTYTSWFDYNCIHQIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLT
STSCRRNLTGDVCALIRVHSLLEQWGLINYQVDAESRPLPMGPPPTPHFNVLTDTPSGLV
PLQHRPLQVSASQHMLHFPEKSIEKPSDLQNFGLRIDIYAKKHPKSKGASAGREWTEQET
LLLLEALEMYKDDWNKVSEHVGSRTQDDCILHFLRLPIEDPYLENSEASMGPLAYQPVPF
SQSGNPVMSTVAFLASVVDPRVASAAARAALEEFSRAREEAPTDIFTVAFQKSQRVGHNL
DSAFALQSGGIAGLDQDPSEKTDGSGFEKMNIESEHHDKPEGDSLLIEGERVKNEEKDES
EGERGEESAAEESFELGHTQGEGEDLRRPVELELVEANIATAAAAALASAASKAKHLAAV
EERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLSERQNFHMEQV
KYAEMKAQQNMEQQQQAGASQSSCSVGSAPTGQMMGARHTGAPNGMCE
NT seq 2847 nt   +upstreamnt  +downstreamnt
atggccactcattctttaggatctactgctgctggaccaggtataacccaaactagctgt
agctcttcgttgagtcgaaaaaccgatggcggaccctgctgtaaattctgggaaagccca
gaaacagtctctcagatggaaacggtccgcagttggattggaaagcattataagaagtat
gtgcaggccgatgctccatccagcaagtctctgtgcggactggtcatccaactattgcag
tttcaggaggactcttttggatgcagagcaaataacccagacttcacaaaacttcctgca
aagtgttttctcaacacgaggccaggtggtgccctgtgccatattctgggatcagtatac
aagtttaagactgaacagggctggagacgcttcgatctgcagaacccatccagagtggat
cgtaatgtagaaatgttcatctcaattgagaatactctgatacagaataatctattaagc
agacctgtggtgtacctgtcccctgattttgagcagaagcaaaccgtaaagcttaaagac
attatcttgcggcatcagggcacagttacagaggatcggtcacaagccacccaccaaata
tacccatccctctcaacagcagatgaagaagagtggtttagaccagtcatgagattagat
cggcaggtgatggtacactggggcatgtgtccagacagctatgactctgttgtgtcagca
agtgatgtgaatggagaagtggaggaacctcccaacccagacaagtgctggaaggttcat
gccaaatgggtttttgacaccgacacttttaatgagtggatgaatgaagaagactatgcg
gtaaatgagaatgggaatagtgtgagtttccggcgtcgtatctaccaaaccgaagagaag
gaaccgaaattttggaagaagcggcggcgttccctgtctccatcctcctctgagtctagg
aaaaagggtggaaagaagggctcatataaaaagcgtggccaaccggaagacccggagcca
gaggaggaccttactaaagacatggaggatccaacacctgtacctaacatggaggaggtc
atactacctaaaaatgtgaacctgaaaaaagacagtgaaaatactccagttaaaggaggg
atcatggcagatttagatgaccaggaagaggatctgctctccggtgtcagagatgaggac
gagcagagagagtttagtcgtgggatggagggggaggagagtgctacagaacaaatacat
cacatcattatccccacctatacttcctggtttgactacaattgtattcaccaaatagag
agacgagcacttcctgagttcttcaatgggaaaaataaatccaaaacaccagaaatatat
cttgcctaccgcaacttcatgattgacacatacagactaaaccctcaagagtatcttacc
tcaacgtcctgcagaagaaacctgacaggagatgtgtgtgcacttataagagttcattct
ttattggagcagtggggtttaataaattatcaggtagatgcagagagtagacccctaccc
atgggcccacccccaacaccacacttcaatgttctcacagacacaccttcaggacttgta
ccgctgcaacacagacctttacaggtatcagcttctcagcatatgttgcatttcccggaa
aagtccatagaaaagccgtccgacctgcagaattttggtctgcggattgacatttatgct
aagaaacatcctaagagtaaaggagcaagtgcaggaagagaatggacagaacaggaaaca
ctgttgcttttagaggctttagaaatgtataaagacgactggaataaggtgtctgaacac
gtgggtagccgtacacaggacgactgtattcttcatttcctgcggttgcccatagaggac
ccatacctggagaactccgaagcctctatgggcccactagcctatcagccggtcccgttc
agccaatcagggaaccccgtaatgagcactgttgctttcctggcctctgtggttgaccct
cgagttgcttctgctgctgccagggcggctttagaggagttctcgagagcaagagaggag
gcaccgactgacatattcactgttgcctttcaaaagtcacagagagtcgggcataattta
gattctgcattcgcactgcagtcaggtggcatcgcaggacttgatcaagatccatcagaa
aagaccgatggaagtggctttgaaaaaatgaacattgaatctgagcaccatgacaagcct
gagggtgacagcctcctgattgagggggaacgtgtgaagaatgaagagaaagacgagagt
gaaggagaaagaggagaggaaagcgcagcagaggagagttttgaattgggccacacccaa
ggagagggggaagacttaagaagaccggtggagcttgaattggtggaggcaaacattgcc
acagcagctgctgcagcacttgcctctgcagctagcaaagcaaagcacttggctgcagtt
gaagagaggaagattaagtctctggtggctctgctggttgaaactcagatgaaaaagttg
gagatcaaactgagacattttgaagagctagagaccatcatggatcgagaaaaagaagct
ttggagcagcagagacagcagttattgtctgagaggcagaacttccacatggagcaggtg
aaatatgccgaaatgaaggcacagcagaatatggagcagcagcaacaagcaggtgcatca
caaagcagttgttcggtgggcagcgctcccacagggcagatgatgggcgctagacacact
ggggctcccaacggcatgtgtgagtaa

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