Misgurnus anguillicaudatus (oriental weatherfish): 129455388
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Entry
129455388 CDS
T09481
Symbol
pabpc1b
Name
(RefSeq) polyadenylate-binding protein 1b
KO
K13126
polyadenylate-binding protein
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu03015
mRNA surveillance pathway
manu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129455388 (pabpc1b)
09123 Folding, sorting and degradation
03018 RNA degradation
129455388 (pabpc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
manu03019
]
129455388 (pabpc1b)
03041 Spliceosome [BR:
manu03041
]
129455388 (pabpc1b)
Messenger RNA biogenesis [BR:
manu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
129455388 (pabpc1b)
mRNA cycle factors
Stress granule specific factors
129455388 (pabpc1b)
Spliceosome [BR:
manu03041
]
Complex C
Other components
Complex C specific factors
129455388 (pabpc1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_MUD2_C
RBD_DEAH11
RRM_10
RRM_5
RRM_ACIN1
RRM_occluded
RRM_3
HTH_58
Motif
Other DBs
NCBI-GeneID:
129455388
NCBI-ProteinID:
XP_073714276
LinkDB
All DBs
Position
20:complement(15739797..15751811)
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AA seq
634 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDDKLKDVFSKYGAAMSIRVMTDENGKSRGFGFVSFER
HEDAQRAVDEMNGKELNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGIDDERLRKEFAPFGTITSAKVMMDGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMTAIPQAQNRA
AYYPTSQLAQLRPSPRWATQGVRPQHFQNMPGTMRPSAPRPQTFSTMRPASQVPRMMSTQ
RVATQTMGPRPTTAATAAAAPPVRGVPQYKYAPSVRNPQQHMNTQPQVSMQQPAVHVQGQ
EPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPES
LRSKVDEAVAVLQAHQAKEAAQKTVTNSTGVPSV
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgctcccagttaccccatggcctcgctgtatgtgggtgacctgcaccag
gacgtgactgaagcaatgctgtatgagaagttcagcccggccggtgccatcctctctatt
cgcgtgtgcagggacatgatcacgcgcagatcgctcggttacgcctatgtcaacttccag
cagccggcagacgctgaacgggctttagacactatgaacttcgacgtgatcaagggcaga
cctgtccgcatcatgtggtcccagcgtgatccctctctgaggaagagtggtgttgggaac
atcttcatcaagaacctggacaagtctatcgataacaaggccctttatgacaccttttct
gctttcggcaacatcttgtcatgcaaagttgtttgcgacgagaatggctcaaaggggtac
ggctttgtgcactttgagacccaggaggctgctgaaagggccattgagaaaatgaacggc
atgttgctgaatgacagaaaagtgtttgtaggacgtttcaaatctcgcaaagagagagaa
gctgagcttggtgcaagagccaaagaattcaccaatgtgtatattaaaaactttggagaa
gatatggatgacgacaaacttaaggatgtcttcagcaaatacggtgctgctatgagcatc
cgcgtaatgactgatgaaaacggaaaatccagaggctttggttttgtgagttttgagagg
cacgaagatgcccaaagggcggtggatgagatgaatgggaaagagctaaacgggaagctc
atctatgtgggtcgcgctcagaaaaaggtggagcgccaaacagagctcaagcgcaaattt
gaacagatgaagcaggaccgcatgactcgctaccagggtgtcaatctgtatgtgaagaac
ctggatgatggcatagatgatgagcgccttcgtaaagagtttgctcccttcggtacaatc
actagtgccaaggtcatgatggacggcggccgcagtaaaggcttcggttttgtctgtttc
tcttctcctgaagaagccaccaaagcggtgaccgagatgaatggccgcatcgtggccacc
aaaccgctgtatgtggctttggctcagcgtaaagaggaacgacaggctcatctaaccaac
cagtacatgcagaggatggccagcgtccgtgcggtgccaaaccccgtcatcaacccctac
cagcctgctcctccatcaggctacttcatgactgctattccacaagcccagaacagagct
gcatattaccctaccagtcagctcgcccagctcagacccagtccccgctgggccacgcaa
ggtgtccgtcctcagcacttccagaacatgccaggcaccatgcggccctcagctccaaga
cctcagaccttcagcaccatgcgtccggcctcccaggtgccccgcatgatgtccacacag
cgcgttgctactcagactatgggtccacgtcccacaactgctgcgacggcagcagccgca
cccccagtgcggggcgtacctcagtacaaatatgcccccagcgttcgcaacccacagcag
cacatgaacacacagcctcaggtttcgatgcagcagcctgccgtacatgtgcaaggacag
gagccgctgaccgcctccatgctcgccgctgctcctccacaggagcaaaagcagatgctg
ggtgagcgcctcttcccgctaatccagaacatgcatcccagcctggctggcaagatcacc
ggcatgcttctggaaatagacaactccgagcttctccacatgctggagtctcctgagtct
ttgcgctccaaggttgatgaggcagtggctgtgcttcaggctcaccaagctaaagaagcc
gctcagaaaactgtgaccaactctactggtgtgccaagtgtctaa
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integrated database retrieval system
