Mycolicibacterium anyangense: MANY_28330
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Entry
MANY_28330 CDS
T07096
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
many
Mycolicibacterium anyangense
Pathway
many03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
many00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MANY_28330 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
many03400
]
MANY_28330 (mfd)
Enzymes [BR:
many01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MANY_28330 (mfd)
DNA repair and recombination proteins [BR:
many03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MANY_28330 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
AAA_22
DUF3638
Motif
Other DBs
NCBI-ProteinID:
BBZ77496
UniProt:
A0A6N4W6A4
LinkDB
All DBs
Position
complement(3007061..3010741)
Genome browser
AA seq
1226 aa
AA seq
DB search
MTAPGHQYVQTPIAGLVELALRAPTFAELADRAAQRPAELAVVGPSAAKLYTACALARGG
PLLVVTATGREADDLTAELRGVFGPAVALFPSWETLPHERLSPGVDTVGARLMLLRRLAH
PDDARLGPPLRVVVTTVRSLLQPMAPDVADIEPVILAAGAAGPATSGTAAELDFDDLVAR
LVELAYTRVDMVAKRGEFAVRGGILDLFPPTAEHPVRVEFWGDEVSEIRMFSVADQRSIP
EIEVDTVVAVPCRELLLTEQVRARAARLVADRPSGDDNRVTGSVGEMLAKLADGIAVDGM
EALAPVLRPDELTLLTDHLPAGTPVLVCDPEKVRTRGADLIKTGREFLEASWSVAAIGGD
APIDLEQLGGSGFRELAEVRQAAAAGGHPWWTLSQLADEQAIELEVRASPTARGQQSNVD
EIFAMLRAHVLTGGFAAVVAPGTGTAHRVVEQLAERDTPAAMIEAGEPPNAGVVGVLKGP
LHDGIVVPGANLVVITETDLTGNRVTATDGKRLAAKRRNTVDPLALTAGDLVVHDQHGIG
RFVEMVERTVGGARREYLVLEYASSKRGQAADRLYVPMDSLDQLSRYVGGQEPSLSKLGG
SDWTNTKTKARKAVREIASELVALYAKRQAAPGHAFGPDTPWQAEMEDAFGFTETMDQLT
AIQEVKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQ
TFTARMAGFPVTVKGLSRFTDPAESRAVIEGMADGSVDIVIGTHRLLQTAVRWKDLGLVI
VDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVL
TYVGPHDDKQVAAALRRELLRDGQAFYIHNRVSSIDAAAARVKDLVPEARVVVAHGQMPE
DQLERTVEGFWNREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSR
ERGYAYFLYPKEMPLTETAFDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHV
AGVGFDLYVRLVGEAVEAYRAAADGKTVTTAEEPKDVRIDLPVDANLPPEYIASDRLRLE
AYRRLAAAGDDARVAAVVEELIDRYGPLPEPAQRLVAVARLRLLCRQYGVTEVAATGTGS
PTTLRLSPLTLLDSAQLRLKRVYPGASYRATTSTVQVPIPRAGSGVGAPRIRDLELVQMI
ADLLLALDGRPQGEVDITTFAPVAAP
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggcaccagtatgtccagaccccgatcgcgggtctggtcgaattggcg
ttgcgcgcgcccacgttcgccgaactggcggaccgcgcggcgcagcgccccgccgagctg
gctgtggtcggaccgtcggccgccaagctctacaccgcctgtgcgctggcccgcgggggg
ccgcttctggtggtcaccgcaacgggccgggaagccgacgacctcacggccgagctgcgc
ggggtgttcggtcccgcggtcgcgctgttcccgtcctgggagaccctgccgcacgaacgg
ctgtcgcccggtgtcgacaccgtcggtgctcggctgatgctgctgcgccggctggcccac
cccgacgacgcccggctgggcccgccgctgcgcgtggtcgtgaccacggtgcggtccctg
ctgcagccgatggcgcccgacgtcgccgatatcgagccggtgatcctcgcggccggagcc
gccgggccggcgacatcaggcacagcagccgagctggacttcgacgacctggtggcccgg
ctggtcgagctggcctacacccgggtcgacatggtcgccaagcgcggtgagttcgcggtg
cgcggcggcatccttgacctgttcccgccgactgccgagcacccggtgcgcgtcgagttc
tggggcgacgaggtcagcgagatccggatgttctcggtggccgatcagcgctcgatcccg
gagatcgaggtcgacacggtggtcgccgtgccgtgccgcgaactgctgctcaccgagcag
gtgcgggcgcgggcggcccggctggtcgccgaccgtcccagcggtgacgacaaccgggtg
accggcagcgtcggggagatgctggccaagctggccgacggtatcgccgtcgacggcatg
gaggcgctggccccggtgctgcggcccgacgagctcaccctgctcaccgatcacctgccg
gccggcacgccggtgctggtgtgcgatccggagaaggtgcgcacccgcggggccgacctg
atcaagaccgggcgggagttcctggaggcgtcgtggtcggtggcggccatcggcggtgac
gccccgatcgatctcgagcagctgggcggttcgggcttccgtgagctcgccgaggtgcgc
caggccgccgcggccggcgggcatccgtggtggacgctgagccagctcgccgacgagcag
gcgatcgaactcgaggtgcgcgcgtcgccgaccgctcgtggccagcagagcaacgtcgac
gagatcttcgcgatgttgcgtgcccacgtgctgaccggaggtttcgccgccgtcgtcgcc
ccgggcaccggcaccgcgcaccgcgtcgtcgaacaactcgccgagcgggacaccccggcg
gccatgatcgaggcgggcgagccgcccaacgccggcgtggtgggcgtgctcaagggcccg
ctgcacgacggcatcgtggttcccggcgccaatctggtggtgatcaccgagaccgacctg
accggcaaccgggtcaccgcgaccgacggcaagcggctggcggccaagcgccgcaacacc
gttgacccgctggcgctgaccgccggtgacctggtggtgcacgatcagcacggcatcggc
cggttcgtggagatggtcgaacgcaccgtcggcggggcccgccgcgaatacctggtgctg
gagtacgcgtcgtccaagcgcggccaggccgccgaccggctctacgtgccgatggactca
ctggatcagctgtcccgctacgtcggcggccaggagcccagcctgagcaagctcggcggc
agcgactggacgaacacgaaaaccaaggcgcgcaaggccgttcgcgagatcgccagcgaa
ctcgtggcgctctacgccaagcggcaggccgccccggggcatgcgttcggcccggacacc
ccgtggcaggccgagatggaggatgcgttcggcttcaccgagacgatggaccagctcacc
gctatccaggaggtcaagagcgacatggagaagccggtcccgatggaccgggtgatctgt
ggtgacgtgggctacggcaagaccgagatcgcggtgcgggcggccttcaaggcggtgcag
gacggtaagcaggtggcggtgctggtgcccaccacgctgctggccgaccagcacctgcag
acgttcaccgcgcggatggcgggctttcccgtgacggtgaaaggactttcgcggttcacc
gatccggccgagtcgcgtgccgtcatcgaggggatggccgacggcagtgtcgacatcgtg
atcggcacccaccggctgctgcagaccgcggtgcgctggaaggacctcggtctggtgatc
gtcgacgaggaacagcgtttcggtgtggagcacaaggaacacatcaagagcctgcgcacc
cacgtcgacgtgctgaccatgagcgccacgccgataccgcgcaccctggagatgagcctg
gccgggatccgggagatgtcgaccatcctcaccccgcccgaggagcgctacccggtgctc
acctacgtcggcccgcacgacgacaagcaggtggctgccgcactacgccgtgaactgctg
cgcgacgggcaggccttctacatccacaaccgggtcagcagcatcgacgccgccgccgca
cgggtcaaggatctggtgcccgaggcgcgggtggtggtggcgcacggccagatgcccgaa
gatcagctggagcgcaccgtcgaagggttctggaaccgggagttcgacattctggtgtgt
accaccatcgtcgagaccgggctggacatctcgaacgccaacaccctgatcgtcgagcgc
gccgataccttcggcctgtcccagctgcaccagttgcggggccgggttggccgcagccgg
gagcgcggctacgcctacttcctgtaccccaaggagatgccgctcaccgagaccgccttt
gaccggctggccactatcgcgcagaacaacgaactgggtgcgggtatggcagttgcgttg
aaggacttggagattcgcggggcgggcaacgtgctgggcgttgaacagtccggccacgtc
gccggtgtgggcttcgacttgtatgtgcgactggttggtgaggcggtcgaggcctaccgg
gcggcggccgacggcaagacggtcaccaccgccgaggagcccaaggacgtccgtatcgac
ttgccggtggacgccaacctgccgccggagtacatcgccagtgacaggctgcggctggag
gcctaccgcaggctcgccgcggccggcgacgacgccagggtggccgcggtggtcgaggaa
ctgatcgaccgctacggcccgctgcccgagccggcccagcgactggttgccgtggcgcgg
ttgcggctgctgtgccgccagtacggtgtcaccgaggttgcggccaccggaaccggttct
ccgacaacgcttcggctgtcgccgctgaccctgctggactccgcgcagctgcggctgaag
cgggtgtatccgggcgcgagctaccgggccacgacgtcgacggtgcaggtgccgatcccg
cgcgccggtagcggcgtgggtgcgccgcggatccgggacctggagttggtgcagatgatc
gccgacctgctgctggccctcgacgggcggccgcagggcgaggtcgacatcacgacgttc
gctccggtggctgcgccgtga
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