Mycobacterium avium subsp. paratuberculosis MAP4: MAP4_1301
Help
Entry
MAP4_1301 CDS
T02662
Name
(GenBank) cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mao
Mycobacterium avium subsp. paratuberculosis MAP4
Pathway
mao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MAP4_1301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mao03019
]
MAP4_1301
03009 Ribosome biogenesis [BR:
mao03009
]
MAP4_1301
Enzymes [BR:
mao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MAP4_1301
Messenger RNA biogenesis [BR:
mao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MAP4_1301
Ribosome biogenesis [BR:
mao03009
]
Prokaryotic type
rRNA helicases
MAP4_1301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
AGL36238
LinkDB
All DBs
Position
1376549..1378249
Genome browser
AA seq
566 aa
AA seq
DB search
MTLPDSSTEAASPTFADLQIHPSVLRAIADVGYETPTGIQAATIPALMAGSDVVGLAQTG
TGKTAAFAIPILSKIDAASTATQALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGS
SYAVQLAGLKRGAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRI
LSETPEYKQVALFSATMPPAIRKLTAKYLHDPLEVSTKAKTTTAENISQRYIQVAGPRKM
DALTRVLEVEPFEAMIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKD
GGIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRE
RHLLKAIEKATRQPLTEAELPTVEDVNAQRVAKFADSITAALGAPGIDLFRKLVQDYERE
HDVPMADIAAALAVQSRDGEEFLMAPEPPRERRERHTERRERTEKPRSTRPLATYRIAVG
KRHKIGPGAIVGAIANEGGLHRSDFGHIAIGPGFSLVELPAKLPKSTLKRLEQTRISGVL
INLQPDRAAAKARGRDGGKPRRKYGG
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgaccctcccggacagctcgactgaggctgcctccccgacatttgccgacctgcagatc
catccctcggttttgcgggcgatcgccgacgtcggctacgagacgcccaccggcatccag
gccgcgaccatcccggcgttgatggccggttccgacgtcgtcgggctggcccagaccggc
accggcaagacggccgcgttcgcgatcccgatcctgtccaagatcgacgccgccagcacc
gccacccaggcgctggtgctggcgcccacccgggagctggcgttgcaggtggccgaggcg
ttcagccgctacggcgcgcatctgccgaagatcaacgtgctgccgatctacggcggctcg
tcctacgccgtgcagctggccggattgaaacgcggcgcccacgtggtggtcggcacgccg
ggccgggtgatcgaccacctcgagcgcggcacgctggacctgtcgcacgtcgactacctg
gtgctcgacgaggccgacgagatgctcaccatggggtttgccgaagaggtcgaccgcatc
ctgtccgagaccccggaatacaagcaggtcgcgctgttctcggcgaccatgccgcccgcg
atccgcaagctcaccgccaagtatctgcacgatcccctcgaggtcagcaccaaagcgaaa
accacgaccgccgagaacatttcgcagcgctacatccaggtcgccggcccgcgcaaaatg
gacgcgctgacccgggtgctggaggtcgagccgttcgaggcgatgatcgtgttcgtccgg
accaaacaggccaccgaggaagtcgccgaaaggctcagggcgcgcggcttctcggcggcc
gcgatcaacggggacatcccgcagggccagcgtgagcggaccgtcgccgccctcaaggac
ggcggcatcgacatcctggtcgccaccgacgtagccgcccgcggcctggacgtcgaacgg
atctcacacgtgctcaactacgacatcccgcacgacaccgagtcctacgtgcaccggatc
ggacgcaccggccgggcgggacgctcgggaaccgcgctgctgttcgtctccccgcgagaa
cgccacctgctcaaggccattgagaaggcgacccgccagccgctcaccgaagccgagctg
cccaccgtcgaggacgtcaacgcccagcgggtggccaagttcgccgactccatcaccgcc
gcgctcggcgctcccggcatcgatctgttccgcaagttggttcaggactacgaacgcgag
cacgacgtcccgatggccgatatcgccgccgcgctggccgtgcagtcacgcgacggcgag
gagttcctgatggcgcccgaaccgccgcgggagcgacgcgaacggcacaccgaacggcgc
gagcgcaccgagaaacccaggagcacaaggccgttggccacctaccgcatcgcggtgggc
aaacggcacaagatcggtccgggcgcgatcgtgggcgccatcgccaacgagggcgggctg
catcgcagcgatttcggccacatcgccatcggacccggcttctcgctggtggagttgccg
gccaagctgcccaagtcgacgctgaaaaggcttgagcagacccgcatctccggagtgctg
atcaacctccagccggaccgggcggcggccaaggcgcgcggtcgggacggcgggaaacca
cgcaggaaatacggcggatga
DBGET
integrated database retrieval system
