Mycobacterium avium subsp. paratuberculosis MAP4: MAP4_1557
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Entry
MAP4_1557 CDS
T02662
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mao
Mycobacterium avium subsp. paratuberculosis MAP4
Pathway
mao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MAP4_1557
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mao03019
]
MAP4_1557
03009 Ribosome biogenesis [BR:
mao03009
]
MAP4_1557
Enzymes [BR:
mao01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MAP4_1557
Messenger RNA biogenesis [BR:
mao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MAP4_1557
Ribosome biogenesis [BR:
mao03009
]
Prokaryotic type
rRNA processing factors
MAP4_1557
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
AGL36485
LinkDB
All DBs
Position
1676790..1679630
Genome browser
AA seq
946 aa
AA seq
DB search
MVDGAPTADPSEESTRSGDLPDRLRVHSLARTLGTTSKRVLDALSELDGRVRSAHSTVDR
EDAVRVRDLLAAQPSAEPEPAAEDAASGGPDAGIAGEPESRLLLETPDATERPHYMPLFV
APQPLESSDDDGDADETADSDDSDGDDDEQADRPSSRRRRRGRRGRGRGRGEQGGSDGPG
DGDDDEPQNRGKKGGQSDGDDDSDGQDAEDADDSDTGDDGSADGGNRRRRRRRRRKSGSG
DDNEDGPSPDDPPNTVVHERPPRNGKNGGDDGNGSSSSEIKGIDGSTRLEAKRQRRRDGR
DAGRRRPPVLTEAEFLARREAVERVMVVRDRIRTEPPHQGSRYTQIAVLEDGIVVEHFVT
SAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGLGGSDRKIEQA
LKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGASSTGISRKLPDTERQRLKEI
LREVVPSDAGVIIRTASEGVKEDDIRGDVTRLQERWKQIEAKAIEIKEKAAGAAVALYEE
PDVLVKVIRDLFNEDFAGLIVSGDDAWNTINEYVNSVAPDLVSKVTKYEPATGPDGTPGP
DVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGSGGNLEQTVTKN
NLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVTSL
GLVQLTRKRLGTGLVEAFSTSCPNCGGRGILLHADPVDSAPSNGRKSESGGRRGRRKKSK
AEEPVVAKVPVHSPGEHPMFKAMAAGSSTQAASDEDESAAEEAGDELERKKAARAEELEA
AEDTEDLEDTEDDDEDSDDSDDEDLDDEDIDDEEDLGDDDEDLELDDDDLDTEDSDDSDD
SDDSEDSDDSEDQRDPAAERPGVSALGRPRRRRAAGRPAGPPIHAD
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
gtggtagacggtgcaccgactgcagacccatcagaagaatcgacccggtccggggacctg
cccgaccgtttgagagttcattcgctggcccgaacgctgggaaccaccagcaagcgggtg
ctggacgcgctcagcgagctggacggccgcgtgcgcagcgcgcactccacggtggaccgc
gaggacgcggtccgggtgcgtgacctgctcgccgcccagccgtcggcagaaccggagccg
gctgccgaggacgcggcgagcggcggaccggacgccgggatcgccggcgaacccgaatcc
cggctgctgctggaaacccccgacgctaccgagcggccgcattacatgccgctgttcgtc
gcgccgcagccgctggaaagcagcgacgacgacggcgatgccgacgagaccgccgactcc
gacgactcggacggcgacgacgacgagcaggccgaccggccgtccagccggcggcgccgc
cgcggccgtcgcggacgcgggcgaggccgcggcgagcagggcggatccgacgggccgggc
gacggcgacgacgacgagccgcaaaaccggggcaagaagggcggccagtcggacggcgac
gacgactccgacggccaggacgccgaggacgccgacgactccgacaccggtgacgacggc
tcggccgacggcggcaatcgccgccgccgccggcgccggcgccgcaaatccgggtccggc
gacgacaacgaggacggaccctcgcccgacgatccgcccaacaccgtcgtgcacgagcgg
cctccccgcaacggcaaaaacggcggggacgacggcaacggcagctcgagcagcgagatc
aagggcatcgacggctcgacccggttggaggccaagcggcaacgacgccgggacggccgc
gacgccggccggcgccgccccccggtgctgaccgaggccgaattcctggcgcgtcgcgag
gccgtcgaacgggtcatggtggtgcgcgaccggatccgcaccgagccgccgcatcagggc
tcgcggtacacccagatcgcggtgctcgaggacggcatcgtggtcgagcacttcgtcacc
tcggccgcttcggcgtccctggtgggcaacatctacctgggcatcgtccagaacgtgctg
ccctcgatggaggcggccttcgtcgacatcggccgcggccgcaacggcgtgctctacgcg
ggcgaggtcaactgggaggccgccgggttgggcggatccgaccgcaagatcgagcaggcg
ctcaaacccggcgactacgtcgtcgtccaggtcagcaaggatccggtcgggcacaagggc
gcccggctcaccacgcaggtgtcgttggcgggccgctacctggtttacgtgccgggggcg
tcgtcgacgggcatcagccgcaagctgcccgacaccgaacgccagcggctcaaggagatc
ctgcgcgaggtggtgccgtcggacgccggggtgatcatccggaccgcgtccgaaggggtc
aaggaagacgacatccgcggcgacgtcacccggctgcaggagcgctggaagcagatcgag
gccaaggcgatcgagatcaaggagaaggcggccggcgcggcggtggcgctctacgaagag
cccgacgtgttggtcaaggtcatccgcgacctgttcaacgaggacttcgccggcctgatc
gtctccggcgacgacgcctggaacaccatcaacgaatacgtgaattccgttgcgcccgac
ctggtttcgaaggtcaccaagtacgagccggccaccggcccggacggcacgccggggccg
gacgtgttcgcggtgcaccgcatcgacgaacaactcgccaaggcgatggaccgcaaggtg
tggctgccgtcgggcggcacgctggtgatcgaccggaccgaggccatgacggtgatcgac
gtcaacaccggcaagttcaccggctcggggggcaacctggagcagacggtgaccaagaac
aacctcgaggcggccgaggagatcgtgcgccagctgcggctgcgcgacatcggcggcatc
gtggtcatcgacttcatcgacatggtgctggagtccaaccgcgacctggtgctgcgccgg
ctgaccgaggcgctggcccgcgaccgcacccgtcatcaggtgtcggaggtgacgtcgctc
gggttggtgcagctgacccgcaagcggttgggcaccgggctggtggaggccttctcgacg
tcctgcccgaactgcggcggccgcggcatcctgctgcacgccgacccggtggactcggcc
ccgtcgaacgggcggaagtccgagtccggggggcgccgcggccggcgcaagaagagcaag
gccgaggagccggtggtggccaaggtgccggtccactcgcccggcgagcatccgatgttc
aaggcgatggccgcgggctcgtccacgcaggcggcttccgacgaggacgaatccgccgcc
gaggaggccggtgacgagctcgagcggaagaaggcggcgcgcgccgaggagctcgaagcg
gccgaggacaccgaggacctcgaggacaccgaggacgacgacgaggactccgacgactcc
gacgatgaggacctcgatgacgaggacatcgacgacgaggaagacctgggcgacgacgac
gaggacctcgagctggacgacgacgacctggacaccgaggactccgacgattccgacgat
tccgacgactcggaggattccgacgattccgaagaccagcgggacccggcggccgagcgc
ccgggcgtttcggccctcggccggccacggcgtcggcgcgcggccggccggccggccgga
ccgccgatccacgcggactga
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