Marinobacter nauticus VT8: Maqu_0073
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Entry
Maqu_0073 CDS
T00454
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
maq
Marinobacter nauticus VT8
Brite
KEGG Orthology (KO) [BR:
maq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maq03019
]
Maqu_0073
Enzymes [BR:
maq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Maqu_0073
Messenger RNA biogenesis [BR:
maq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Maqu_0073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
CON_HrpB
DEAD
ResIII
Flavi_DEAD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ABM17180
UniProt:
A1TWR1
LinkDB
All DBs
Position
93147..95621
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AA seq
824 aa
AA seq
DB search
MLPIDGILPELTRTLAKTTTALLQAPPGAGKTTRVPLALLDAPWRDGRKILMLEPRRLAA
RSAARYMARQLGEAPGQTVGYRTRLDTRVSGTTRIEVVTEGILTRLIQNDPMLEDYAAVL
FDEFHERSLQADLGLALVRESQQALREDLRLLVMSATLDTAPIAKMLGDVPVISSEGRAF
PVDVLYRPLSRSARMVDHVTAVVLEVLGDQAGSVLVFLPGAGEIRRVAQQLAGQLPENVV
LAPLYGNLKSEEQDRAIAPAPDGSRKVVLATAIAETSLTIEGVRVVVDAGQQRRAVFDPN
SGMTRLITGRVSKASAEQRKGRAGRVEPGVCYRLWSESEQFGLAEFTPAEIQEADLAPLV
LELAQWGARSPDQVAWIDAPPQAHWQQAVDLLQWLDLLDADGAITDHGKAARDLGMHPRL
AHMVLRGRALGFGQLAAELAALLEERDLLGPGSGADLHERIRVVRGQRPPRGLDTARLQA
VRQAAKRLCREPGSRSEPVATEVGRVLAQAYPDRIARRRSGEAPRYQLSNGKGASLREHD
PLARENWLVAADLDGKAREATIYLAAPVDLGDLEQDLAAHIQEREEALWDDKRGTVVARH
VRKLGALILAEKPLQQVAPELIQQGLLDAVRRKGLDRLPWNEAARQWQARVQLLATQFPG
HWPDVTDSALLAGVESWLAPFMAGMQRWSDLARLDLTSALNSLLDYPQQQELDELAPKAL
AIPTGQKVTLDYTADNGPVLAAKLQALFGWTETPTVAGGRVPVVTHLLSPAQRPLAVTAD
LASFWQNAYPQVRKELRGRYPKHPWPEDPLTAQAQQGTKKRPAR
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgctcccgattgatggcatcctcccagaactgacccgcacactggcaaagaccaccacc
gctttgctccaggcgccgcccggcgccggtaaaaccacccgggtgccgttggcgctgctg
gatgcaccctggcgcgatggccgcaaaatcctgatgctcgaaccccgccgactggcggcc
cggtcggcagcgcggtatatggcccggcaactgggagaggcgcctgggcagacggtgggc
tatcgcacccgactggataccagggtctccggcaccacccggatcgaagtagtgaccgag
ggtatactcacccgcctgatccagaacgaccccatgctggaggactatgccgctgttctg
tttgacgaattccatgaacgttccctgcaggccgatctggggctggcactggtgcgtgag
agccagcaggccctgcgagaagacctgcgccttctggtgatgtccgcgacactggatacc
gcgccgattgccaagatgctgggggacgtgccggtgatttccagtgaaggccgggcgttt
ccggtggatgtcctttatcggcccctgtcccgcagtgcccggatggtggatcacgtaacg
gcggtggtgctggaggtcctgggagaccaggctggctcggtgctggtgttcctgcccggg
gccggtgaaattcgccgggtggcgcaacagctggcggggcaactaccggaaaacgtggtg
ttggcacccttgtatggcaacctcaagtctgaagaacaggatcgggccattgcgccggcc
ccggacggttctcgcaaggtggtgctggcgaccgccattgctgagaccagcctcaccatt
gaaggtgttcgggtagtggttgatgccggccagcagcgccgggccgtgtttgatcccaac
agtggcatgacccgcctgatcaccggccgggtgtccaaagcctctgccgagcagcgtaaa
ggccgggccggacgggtcgaaccgggggtgtgctaccggttatggagcgagtcggagcag
tttgggctggctgagttcacgccagcggagattcaggaggcggacctggcgccgctggta
ctggagctggcccagtggggggctcgttcaccggatcaggtggcctggattgatgcgccg
ccacaagcccactggcagcaggcggtggatttattgcagtggctggatttgctggatgct
gacggtgctattaccgatcacggcaaggccgcccgggatctggggatgcaccctcgtctg
gcccatatggttctccggggcagggccctgggatttggccagctggcggcggaactggcg
gcattgctggaagagcgtgatttgctggggccaggctccggtgcggatttgcacgaacgg
atccgggtggtacggggacaacggccaccccgtggtctggatacggcccggttacaggcg
gtacggcaggcggcgaaacggttgtgccgggagccggggtcacggagcgaacccgttgct
accgaggtgggccgggttttagcccaggcctatccggaccgcattgcccgtcgccgttcg
ggcgaggcaccgcgctaccagctcagcaatggcaagggggcgagcctgcgggaacatgat
ccgctggcccgggagaattggctggtggccgcggacctggacggtaaggcccgggaggcg
acgatttatctggcggcgccagtggatctgggggatctggagcaggacctggctgcgcac
atacaagaacgggaagaagccctctgggacgacaagcggggcacagtggtggcgcgtcac
gtacgcaagcttggcgccctgatactggcggaaaagccgttgcaacaggtggcccccgaa
ctgatccagcagggtttgctggatgccgtccgtcgcaaaggactggatcggctgccctgg
aacgaggccgcccgccagtggcaggcccgggtgcagttactggccacacagttccccggt
cactggccggatgtgacggattctgccctgctggccggtgtggaaagctggttggcgccg
tttatggccggcatgcagcggtggtcggatctggcccggcttgatctgacatccgccctg
aacagcctgctcgattatccacagcaacaagaactggatgaactggctccgaaagctctg
gccatccccaccggccagaaggtgacgctggattacacggccgacaacggcccggtgcta
gctgccaagctgcaggccctgtttggctggactgaaacaccgacggtggcgggcggccgg
gtgcccgtggtaacccacctcctgtccccggcccagcgcccgctggccgtcacggcagat
ctcgccagcttctggcagaacgcctatccacaggtacgaaaagaactccggggccgctac
ccgaaacacccctggccggaagatccgcttacggcccaggctcagcagggaacgaaaaaa
cgccctgctcgctga
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