Marinobacter nauticus VT8: Maqu_0713
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Entry
Maqu_0713 CDS
T00454
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
maq
Marinobacter nauticus VT8
Pathway
maq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
maq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Maqu_0713
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
maq03021
]
Maqu_0713
03400 DNA repair and recombination proteins [BR:
maq03400
]
Maqu_0713
Enzymes [BR:
maq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Maqu_0713
Transcription machinery [BR:
maq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Maqu_0713
DNA repair and recombination proteins [BR:
maq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Maqu_0713
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Phage_DsbA
Motif
Other DBs
NCBI-ProteinID:
ABM17810
UniProt:
A1TYJ1
LinkDB
All DBs
Position
821664..825878
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLLNLLKSQNQSKEFDAIRIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVALASVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFIVIDPGMTTLEKGQLLNDEQYYEALEEFGDEFDARM
GAEAVKQLLEDIDLQAEVDALREEIPQTNSETKIKKFSKRLKILEAFLYSGNKPGDMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPY
LRLHQCGLPKKMALELFKPFIFSKLEHRGLATTIKAAKKMVEREEGVVWDILDEVIREHP
ILLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNVLSPANGEPIIVPSQDVVLGLYYMTRERHAALGEGMVFADVKEAHRAYGAG
QVDLQAKVKVRVKEVAVDEDGNRTESFRIVDTTVGRALLYDIVPDGLPFEIVNKPMVKKA
ISNLINTCYRDAGLKDTVIFADQLMYMGYHYATRSGISIGFNDFEIPPEKYELVDAASDE
VKDIENQYASGLLTQGEKYNKVIDIWSRANDKVSKAMMERLSKEQVIGPDGQPVKGEDGE
DLMQESFNSVYMMADSGARGSAAQIRQLSGMRGLMAKPDGSIIETPITANFREGLNVLQY
FISTHGARKGLADTALKTANSGYLTRRLVDVSQDLVVTEEDCGTDEGLLMTPHIEGGDVV
VPLGDRVLGRVTARDVFTPTDKDNAVVPAGTLLDEKTVEMVERAGVDEIWVRSAITCETR
HGICSKCYGRDLARGHQVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAVDNIQ
VKHGGTVRLHNLKSIEKTDGSLVVVSRSSALAIADEQGREREWYKLPYGAVLSVKNGDQV
EAGVVVAKWDPHTHPIIAEAKGTAKFVNMEEGITVRTQADELTGLSTMEVIDPKERPAAG
KDIRPAIQLVDDSGEEVELPGGGTAIFFLPANALVTMANGAKIELGDVVARIPQESSKTR
DITGGLPRVADLFEARRPKESAILAEISGVVSFGKETKGKKRLVITPKDDDAYEVLIPKH
RQLNVFEGETVEKGEVISDGPSNPHDILRLLGVVELAKYITNEIQDVYRLQGVVINDKHI
EVIVRQMLRKVEITDPGDTTLLSGDQVEITQVMEENEKANAADKEPARFERLLLGITKAS
LATESFISAASFQETTRVLTEGAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHNERRRKR
DLEEQGVTAADVEEALSAELNRES
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttgctgaatcttctcaagagccagaatcagagcaaggaattcgacgccatc
cgcattggcctggcgtcgcctgacatgattcgttcctggtcttttggcgaagtaaaaaag
cctgagaccattaactaccgtaccttcaagccggagcgtgacggtcttttctgtgccaag
atcttcggcccgatcaaggactacgagtgtctgtgcggaaaatacaagcgcctcaagcac
cgcggtgtcatttgtgaaaagtgtggtgtcgaggttgccctggcgagcgttcgtcgtgag
cgcatgggccatattgagctggccagcccggtcgcccatatctggttcctgaagtcgctg
ccgtcccgcatcggtctgatgctggacatgaccctgcgtgacatcgagcgggttctgtac
ttcgagagctttattgttatcgatccgggcatgaccactctggagaagggccagctgctg
aacgatgagcagtattacgaagccctggaagagtttggtgacgagttcgacgcccgcatg
ggtgcggaagccgtcaagcaattgctggaagacatcgatctgcaggcagaagttgacgcg
ctgcgcgaagaaattccgcagaccaactccgaaaccaagatcaagaaattcagcaagcgc
ctgaaaattctggaagcgttcctgtattccggtaacaagccaggcgacatggtcatgacc
gtgctgccggttcttccgccggacctgcgccccctggttccgctggatggtggccgtttt
gccacttccgacctgaacgacctgtaccgtcgggtgatcaaccggaacaaccgtctcaag
cgccttttggagctgaatgctccggacatcatcgtgcgtaacgagaagcggatgctgcag
gaagctgtggatgccctgctggacaatggccgtcgtggccgtgccatcaccggcaccaac
aagcgcccgctgaagtccctggctgacatgatcaagggtaagcagggtcgtttccgtcag
aacctgctgggtaagcgtgttgactactccggccgttcggtgatcgtggtaggtccgtac
ctgcgcctgcatcagtgcggtctgccgaagaaaatggctctggagctgttcaaaccgttc
attttctcaaagcttgagcaccgcggactggcgaccacgatcaaggccgccaagaagatg
gtcgagcgtgaggaaggcgtggtctgggatatcctggatgaggtcatccgtgaacatccg
atcctgctgaaccgtgcgccgaccctgcaccgtctgggtatccaggcgttcgagccggtt
ctgatcgaaggtaaggccattcagctgcatccgctggtgtgtgcggcctacaacgctgac
ttcgatggtgaccagatggcggtacacgtaccgctgactctggaagcccagctcgaagcc
cgcgcgttgatgatgtctaccaacaacgtgttgtcgcccgccaacggcgagcccattatc
gtaccgtctcaggacgtggtactggggctgtactacatgacccgtgagcgtcacgccgct
ctgggtgaaggtatggtctttgctgacgtcaaggaagcccatcgcgcttacggtgccggt
caggttgacctgcaggcgaaggttaaggttcgggtcaaggaagttgcggttgacgaagac
ggtaatcgtaccgagagcttccgcattgtcgataccaccgttggtcgcgctctgctttac
gatatcgtgccggacggcctgccgttcgagatcgtcaacaagccgatggtgaagaaggcg
atttccaacctgatcaacacctgttaccgggatgctggtcttaaagacacggtcatcttc
gctgaccagttgatgtacatgggttaccactacgcaacccgttccggtatctcgatcggc
tttaacgatttcgagattccgccggagaagtacgagctggtggatgcggcctccgacgaa
gtaaaagacatcgaaaaccagtatgcatccggtcttctgacccagggtgagaagtacaac
aaggtgatcgacatctggtcccgtgccaacgacaaagtgtccaaggcaatgatggagcgt
ctgtccaaagagcaggttattggccctgatggccagccagtgaagggcgaagacggtgaa
gacctgatgcaggagtccttcaactccgtctacatgatggccgattccggtgcgcggggt
tccgccgcccagatccgtcagctgtccggtatgcgtggtctgatggccaagccggatggt
tccatcatcgaaacgccgattacggctaacttccgtgaaggtctgaacgtactccagtac
ttcatctcgactcacggtgctcgtaaaggtctggcggatactgcactgaagaccgcgaac
tccggttacctgacccgccgtctggttgacgtgtctcaggatctggtggtgaccgaggaa
gactgtggtaccgatgaaggtctgctgatgacgccgcacatcgaaggcggcgacgtggtt
gtgccgctgggcgaccgggttctgggtcgtgtgacggctcgcgatgtgttcacgccgact
gacaaggacaacgccgttgttcctgcgggcacactgctcgacgagaagaccgtcgaaatg
gttgagcgcgcgggtgtagacgaaatctgggtacgctctgcgattacctgtgagacccgt
cacggcatctgttccaagtgttacggccgtgatctggcccgtggccaccaggtgaacgtg
ggcgaagcggtaggtgttatcgctgcccagtccatcggtgagcctggtacccagctgacc
atgcgtaccttccacattggtggtgccgcgagccgggcgtctgcggtagacaatatccag
gtgaagcatggtggtacggtacgcctgcacaacctgaagtcgatcgagaaaaccgacggt
tcgctggtggtggtatcccgttcctccgcgctggccattgccgatgagcaggggcgtgag
cgcgagtggtacaaactgccgtacggtgccgtgctgtctgtgaagaacggtgatcaggta
gaagctggtgttgtggttgccaagtgggatccgcacacgcacccgatcatcgcggaagcg
aagggcaccgccaagttcgtcaacatggaagagggcattactgtccgtacccaggctgac
gagctgaccggtctgtccacgatggaagtgattgacccgaaagagcgtccggctgcgggt
aaggacattcgtccggccattcagttggtcgacgactcgggagaggaagtggagctgccc
gggggcggtaccgcgatcttcttcctgccggccaacgctctggtaaccatggcgaatggt
gccaagatcgagctgggtgatgtggtcgcccgtattccgcaggaaagctcgaagacccgg
gacatcaccggtggtctgcctcgggttgccgacctgttcgaggcccgtcgtccgaaagag
tccgcgatcctcgcggagatcagcggggtggtttccttcggtaaagagaccaaaggcaag
aagcgcctggtgatcacgccgaaggatgatgatgcctatgaggttctgattccgaagcat
cgccagctcaacgtgttcgaaggtgaaaccgttgaaaagggtgaggtgatctcggatggt
ccgtccaacccgcacgacatcctgcgtctgctgggtgtggtcgagctggccaagtacatc
accaacgaaatccaggacgtgtaccgtctgcagggcgttgtcatcaacgataaacatatc
gaggttatcgttcgccagatgctgcgcaaggtggaaatcaccgatccgggtgataccact
ctgctgtcgggcgaccaggtggaaattacccaggtgatggaagagaacgagaaggcgaat
gcggcagacaaagagcctgcacgcttcgaacgtctgctgcttggtatcaccaaggcatcg
ttggcgaccgagtccttcatctctgcggcctcgttccaggaaaccacccgggttctgacc
gagggtgcggtgactggcaagcgggactacctgcgcggtctgaaggaaaacgtggtggta
gggcgtctgattccggccggtacaggtcttgcctatcacaacgagcgccgtcgcaagcgt
gacctggaagagcagggcgtgactgcggccgatgttgaagaagctctgagcgccgaactt
aaccgcgaaagctga
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integrated database retrieval system
