Marinobacter nauticus VT8: Maqu_1876
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Entry
Maqu_1876 CDS
T00454
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
maq
Marinobacter nauticus VT8
Pathway
maq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
maq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Maqu_1876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maq03019
]
Maqu_1876
03009 Ribosome biogenesis [BR:
maq03009
]
Maqu_1876
Enzymes [BR:
maq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Maqu_1876
Messenger RNA biogenesis [BR:
maq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Maqu_1876
Ribosome biogenesis [BR:
maq03009
]
Prokaryotic type
rRNA processing factors
Maqu_1876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ABM18958
UniProt:
A1U1T9
LinkDB
All DBs
Position
2090822..2093992
Genome browser
AA seq
1056 aa
AA seq
DB search
MKRMLINATHPEELRVALVDGQRLFDLDIESSTREQKKANIYKGRITRVEPSLEAAFVDF
GAERHGFLPLKEISKEYFKKSPGQIEGKINIKDVVSEGQEVIVQVDKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGISRRIEGDDRAQLKEAMNGVQVPKSMGIIVRTAGIGRTTEE
LQWDLDYLVQFWEAITQAAGERKAPFLIHQESNVIIRAVRDYLRQDIGEVLIDADNVYED
VLSFVRAVMPTFENKIKLYKDEIPLFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALV
SIDINSSRATKGQDIEETALQTNLEAAEEIARQLRLRDMGGLIVIDFIDMTPAKHQREVE
QKMREALELDRARVQVGKISRFGLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIESLA
LSIMRLIYEESSKEKTAEVRAMVPVSVATFLLNEKRKQLADIEARQGVAVVVAPVPNMET
PHFEILRLRQDETSPEHVSSHQVAQQYSEREEEAAVEVASAEKPVREQAAVKAIRPSAPA
PAPTAAAPTAAAEQEEGLFRKLGKKIACFFRGEEPEQEASHDTNRNRSEERRNQARQDRR
KSRVARDDQRTGGNRSGSDRRQGSQQNRGDDNRGRNRGGRGDDQNRGERGGQNRSNRDDR
SGDSKGNDNRRDNRKDSQGRGQNRNRPQRDQKGPQDNREQQESQKGPSNDKQGGDDKQRK
PRRQRNRDGSPAETPASTPAERKAERSEKHQKDTQPEKAADKTAPVDAKASEPRVDKAEQ
PAATTPETKTAPESRKPEQQEMAEKPETKTEQAEQKEAPSAEDKPEAKDESSRKEKSDGR
RGRSSGRQRKPRSADSAEKSGAAEDKGDKESLPAEAEQKQAAKPQRTEQVTATEAEQPAE
KASAEPAKAEDKEPVKAEAKAPRQAKADSPKASEPETGAASDQKAAEDKADKAPEQKAEA
AKTEPEVDTAPEKQAGSSSEKPADKPEQPAEPVKAEPAPASEKPAEQKEETQEASASEAI
PVTPGRAYNDPREVRKRQRAAEEAKKAEEAKQAGSN
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgatcaatgcaactcatcccgaagagttgcgcgtcgcgctggttgac
ggccaacggctgttcgaccttgatatcgaatccagtacccgcgaacagaaaaaggccaac
atctacaagggccgcattacccgcgtagaacccagccttgaagcggctttcgttgacttt
ggcgcagagcgccacggcttcctgcccctgaaggaaatctccaaagagtatttcaagaaa
tcgcccgggcagattgagggcaaaatcaacatcaaggatgttgtctctgaaggtcaggaa
gtgatcgttcaggtcgacaaggaagagcgtggcaacaagggcgccgccctgaccaccttc
atctccctggctggccgttatctggtgctgatgccgaataatccccgtgcaggcggtatc
tcacgccggattgaaggcgatgaccgagcccagttgaaagaggccatgaacggtgtccag
gtgccgaagtccatgggcattattgtgcgtactgccggtattggccgcaccaccgaagag
ctccagtgggacctcgactacctggtacagttctgggaagccattacccaggcggctggc
gagcgcaaagcgcctttcctgatccaccaggaaagcaatgtgatcatccgcgccgtgcgc
gattacctccgccaggatatcggcgaagtcctgatcgatgccgataacgtttacgaagac
gtgttgagcttcgttcgggcggtcatgcccaccttcgagaacaagatcaagctgtacaag
gacgaaatccctctgttcagtcgttaccagatcgaaggccagatcgaaacggcgttccag
cgcgaagtgaaactgccctccggcggctcgattgtcatcgacccgaccgaagccctggtg
tccattgacatcaactcatcccgggccaccaaggggcaggatattgaagaaacggccctg
cagaccaaccttgaagcggccgaagaaatcgcgcggcaactacgcctgcgggatatgggc
ggcctgatcgttatcgacttcatcgacatgacgccagccaaacaccagcgggaagtcgag
cagaagatgcgtgaagcgctggaactcgacagggcccgcgttcaggttggcaagatctcg
cgtttcggcctgctggaaatgtcacgccagcgtctgcgtccctcactgggcgagacccgc
agcgaggtttgcccacgctgtgaaggccagggcaccatccggggtatcgaatctctggcg
ctgagcatcatgcgcctgatctacgaagaatcctccaaggagaagaccgcagaagtacga
gccatggtgccggtttctgtggccaccttcctgctgaacgaaaaacgcaagcagctggcc
gacattgaagcccgtcaaggcgtagcggttgtggtcgcacctgtgcccaacatggaaacg
ccgcacttcgagattctgcgcctgcgtcaggacgaaacctctccagagcatgtctccagc
catcaggtagctcaacagtacagcgagcgcgaggaagaggcagccgtagaagttgcaagt
gccgagaaaccggtgcgcgaacaggccgccgtgaaagctatccgcccctctgcgccagcc
ccagcaccgacagccgctgcaccaacggctgctgctgagcaggaagaaggcctgttccgc
aaactgggcaagaagatcgcgtgcttcttccggggtgaagaaccggagcaggaagccagc
cacgacaccaaccgcaaccgaagtgaagagcgtcgcaaccaggcccgccaggatcgccgc
aaatcccgtgttgcccgcgatgaccaacgcaccggcggcaaccgcagcggcagtgatcgc
cgccagggtagccagcagaaccgtggcgacgacaaccggggccgcaatcgtggtggccgt
ggtgacgatcagaatcgcggtgaacgcggtggccagaaccgttccaaccgggacgaccgc
tctggcgacagcaagggcaatgacaaccgccgggacaaccgcaaggactcccagggccgc
ggccagaaccggaaccgtccccagcgtgaccagaaaggcccgcaggacaaccgggaacag
caggaatcccagaagggaccttccaacgacaagcagggcggtgacgacaagcaacgcaaa
ccacgccggcaacgtaaccgggacggctcccccgccgagactccggcatctacgccagca
gaacgcaaagcggaacgcagcgagaagcaccagaaagatacccagccggaaaaagcggct
gacaagacagctcctgtggacgctaaagccagtgagccgcgcgtagataaagccgagcaa
ccggccgcaacaacgccggaaaccaaaactgcgccagagagccgcaagcctgaacaacag
gaaatggccgagaagccggagaccaaaaccgaacaggccgagcagaaagaggctccctca
gcagaagacaagcctgaagcaaaggatgagagcagccgcaaagagaagtctgacggccgc
agaggccgcagctccggccgccagcgcaagcctcgctctgcggatagcgctgaaaaatcc
ggtgctgccgaagacaagggtgacaaggagagcttgccggcagaagccgagcagaaacag
gccgccaagcctcagcgtaccgagcaggtcaccgcaacagaagccgagcagcctgcagaa
aaggccagcgccgagcctgccaaagccgaagacaaagaaccggtcaaggcagaggccaag
gcaccccggcaagccaaggctgactcaccgaaggcgtctgagccggaaaccggcgcggct
tctgatcagaaggctgccgaggataaagccgacaaggcgccggaacagaaagccgaggcc
gctaaaaccgagcctgaagtagatacggcgccggagaagcaggccggatccagcagcgaa
aaacccgctgacaaaccggagcagcctgcagagcccgtaaaagccgagccagctccggcc
agcgaaaagccagcggagcagaaagaagagactcaggaagccagtgcatcggaagctatc
ccggtgactccgggccgggcctataatgacccaagggaggtccgcaagcgccaacgcgcg
gccgaagaagccaaaaaggcagaagaggccaagcaggccgggagcaactga
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