Marinobacter nauticus VT8: Maqu_3825
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Entry
Maqu_3825 CDS
T00454
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
maq
Marinobacter nauticus VT8
Pathway
maq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
maq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Maqu_3825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maq03019
]
Maqu_3825
Enzymes [BR:
maq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Maqu_3825
Messenger RNA biogenesis [BR:
maq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Maqu_3825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
CMS1
AAA_22
Utp25_C
HEM4
HI1480
Motif
Other DBs
NCBI-ProteinID:
ABM20894
UniProt:
A1U7C5
LinkDB
All DBs
Position
complement(4244263..4245594)
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AA seq
443 aa
AA seq
DB search
MSFSSLGLSEQLVRATADQGYETPSPIQQQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLL
QRLAENPRTGKGPRALILTPTRELAAQVHDSVNLYSKYVPTKAAVVFGGVKINPQMMKLR
KGLDVLVATPGRLMDLYQQNAVRFNEVEILVLDEADRMLDMGFIRDIRKILALLPAKRQN
LLFSATFSNEIRTLAQGLLDNPVQVEVAARNTTAEKVKQSVYPVDQSQKTALLSKLVRDN
AWDQVLVFTRTKHGANRLTQKLEKDGITAAAIHGNKSQGARTRALADFKAGEVRVLVATD
IAARGLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADEGKLLAGIEKL
IKKQLPRKEVEGFEPKNNLPLKPKAKADPSKARNRRPQGGNGKNFGPKPAGRSGGRGRGG
QGEGQGRGQGQGRSGRPAQRQSA
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttcttctctcggtttgtccgagcagctggtccgtgccacagccgatcagggt
tatgaaaccccgtctcccatccagcagcaggcgattcctgcggtgttgtctggcaaagac
gtaatggccgcggcccagaccggcaccggtaaaaccgctggttttaccctgcctttgtta
cagcgcctggcggaaaacccccgcactggcaaaggcccccgcgccctgattctcacacct
acccgtgagctggccgcccaggtacacgacagcgtgaacctttacagcaaatacgtaccc
accaaggccgctgtggtttttggtggtgtaaagatcaacccgcagatgatgaagctgcgc
aagggcctggacgtactggtggccacaccgggccgtttgatggatctgtaccagcagaac
gcggtgcgcttcaacgaagtggaaattctggtgttggacgaagccgaccgcatgctggac
atgggctttatccgcgacattcgcaagatcctggcgttgctgcccgccaagcgccagaac
ctgctgttctctgccaccttctctaacgaaatccgcaccttggcccagggcctgctggat
aacccggtgcaggtggaagtggcggcccgtaacaccacggccgagaaagtgaagcagtcc
gtctacccggttgaccagagccagaaaactgccttgctgagcaagctggtgcgtgacaat
gcctgggatcaggtactggtcttcacccgtaccaagcacggtgccaaccgcctgacccag
aagctggaaaaagacggtattaccgcagctgcgattcacggcaacaagtcccagggtgcc
cgtacccgtgccctggcggatttcaaagccggtgaagtacgcgtgctggtcgccaccgac
attgctgcccgtggcctggacatcaaacagctgccgcaagtggtgaactttgaactgccg
aacgtgccggaagactacgtgcaccgcattggtcgtaccggccgtgccggcgagagcggg
catgcgctgtcactggtgagcgcggatgaaggcaaactgctggcgggtatcgagaagctg
atcaagaagcagctgccgcgcaaggaagtggaaggcttcgagccgaaaaacaacctgccg
ctgaagcccaaggccaaagcagacccgagcaaagcgcggaatcgtcgccctcagggtggc
aatggtaagaactttggcccgaagccggctggtcgtagcggcggtcgtggccgtggtggt
cagggcgaaggacaaggccgaggccaggggcagggtagaagtggtcgcccggctcaacgc
cagagcgcctga
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