Flagellimonas marinaquae: LDL77_08040
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Entry
LDL77_08040 CDS
T07803
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
maqi
Flagellimonas marinaquae
Pathway
maqi03410
Base excision repair
maqi03430
Mismatch repair
maqi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
maqi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LDL77_08040 (recJ)
03430 Mismatch repair
LDL77_08040 (recJ)
03440 Homologous recombination
LDL77_08040 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
maqi03400
]
LDL77_08040 (recJ)
DNA repair and recombination proteins [BR:
maqi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LDL77_08040 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LDL77_08040 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LDL77_08040 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DSPc
Motif
Other DBs
NCBI-ProteinID:
UBZ15654
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All DBs
Position
complement(1775132..1776820)
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AA seq
562 aa
AA seq
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MRWTIKPKPEQESIDQLSKALGVDDLVAQLLIQRGITNYEEAKAFFRPELNHLHDPFLMK
DMRKAVERIEEAINKGENILVYGDYDVDGTTSVALMSAYLMETYPNVATYIPDRYLEGYG
ISLKGIDFASDNDMSLIIALDCGIKAIDQIKYAKKKGIDVIVCDHHRPGSELPEAIAVLD
PKQEDCEYPYKELCGCGVGFKLIQALGSKQGKTIDDLILYLDLVATAIAADIVPITGENR
VLAYYGLMVINENPRIGIKALIDQTKKRELTITDVVFIIAPRINAAGRMKHGQHAVDLLT
ETNLAQAQQFASEIELFNTERRSLDQEITQEALVQIQENREEGRVTSVVYNENWHKGVIG
IVASRLTETYYRPTLVFTKSGDKLAASARSVKGFDIYNALEGCSDCLEQFGGHMYAAGLT
LLEEQYEMFKNQFERVVSETIDPKLLQPEISIDAKIQMDQITPKLMRILKQFAPFGPGNM
TPVFMAEGLKDTGYARGVGEGEKHLKCSLYQLGSEPIGGIGFNLGDKLDVVKRIKPFDAV
FSLDENEWNGTVSLQLKLRDIR
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgcgctggaccataaagccaaaacccgaacaagaatccattgaccaattgtccaaagca
ttgggcgttgatgatttggtagcgcagctcctaattcaaaggggaataaccaattacgaa
gaggcgaaagcattcttccggcccgagttgaatcatctgcacgatccttttttgatgaag
gacatgcgcaaagcagtggaacggattgaagaagccatcaacaaaggagagaacattttg
gtctatggtgattacgatgtagatgggaccacatccgttgcgttaatgagcgcctatttg
atggaaacctaccccaatgtggccacctacattcccgaccgttatttggaaggttacggc
atttccttaaaaggcattgattttgcctcggacaacgacatgtctttgattatagcgctg
gattgcggcatcaaggccattgaccagataaaatatgccaagaaaaagggcatcgatgtt
atcgtttgcgatcatcaccgaccaggctcagaactgcccgaggctattgcggtactggac
ccaaaacaggaagattgcgaatacccgtacaaagaactttgcggttgcggggtcggtttt
aaactgattcaagctttgggctccaagcaaggcaagaccatcgatgacctgatactatat
ctggatttggtggccaccgccatagctgctgatattgttccgattacgggagaaaatcgg
gtgcttgcctattatgggttgatggtcatcaacgaaaatccgcgtattggaatcaaagcc
ttgatcgaccagaccaaaaaacgggaacttaccataaccgatgtggtgttcattattgcc
ccgcgaatcaacgcggccggaaggatgaaacatggccaacacgccgttgacctgcttacc
gaaaccaatttagcccaagcacagcaattcgcatctgaaattgaacttttcaataccgaa
cgaaggagcttggaccaagaaatcacacaagaggccttggtccaaattcaagaaaaccgg
gaagaaggcagggtcacctcagtggtctataacgaaaactggcacaaaggcgtgatcggt
atcgtggcatctcgactaacggagacgtactaccggccaaccttggtcttcaccaaaagc
ggggataaattggcagcttccgcaagatcggtcaaagggttcgatatctacaatgcactg
gagggatgttccgattgtttggagcagttcggcggtcacatgtatgcagcgggactcacg
ttgttggaagagcagtatgaaatgttcaagaaccaatttgaaagggtggtttctgaaacc
atcgacccaaaactcttgcagcccgaaatttccattgatgccaaaattcaaatggaccag
attaccccaaaactgatgcgcattctaaagcaatttgcgccatttggtcccggcaacatg
acccccgtttttatggccgaaggattaaaggatacggggtatgcccgtggagttggcgaa
ggcgagaaacacttaaaatgcagtctctatcaactaggttcggagcctattggaggcata
ggatttaatttgggcgataaattggatgtggttaagcgaataaaaccttttgatgccgta
ttttcgttggatgaaaatgaatggaacggaacggtgagccttcaactaaaactaagagat
attcgctag
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