Marinobacter sp. Arc7-DN-1: D0851_17170
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Entry
D0851_17170 CDS
T05619
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mara
Marinobacter sp. Arc7-DN-1
Pathway
mara03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mara00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D0851_17170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mara03019
]
D0851_17170
03016 Transfer RNA biogenesis [BR:
mara03016
]
D0851_17170
Enzymes [BR:
mara01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
D0851_17170
Messenger RNA biogenesis [BR:
mara03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D0851_17170
Transfer RNA biogenesis [BR:
mara03016
]
Prokaryotic type
tRNA degradation factors
D0851_17170
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_HELZ2
OB_Dis3
WHD_RNase_R
CSD
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AXS84599
LinkDB
All DBs
Position
3648588..3651131
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AA seq
847 aa
AA seq
DB search
MVSRNKKDRDPHASREAQKYDNPIQSREFILSHLKDRGAPATHETLCSELGQNSPEGIEA
LRRRLIAMCRDGQLICNRRGAYLPIEEADLVTGRVIGHKDGFGFLVPDDGGSDLFLTARQ
MRQVFHGDRVAARVDRVDDRGRREGVIVEVLEHRTEQTVGRFFKESGIAFVVPENARINH
EVLIPEEHAGEAYHGQYVVVEILRQPTIRTQPTGRVIEILGEHMAPGMEIDVAIRSYDIP
HSWPPAVGEQAASIPAEVAEKDKANRVDIRNMRLVTIDDESARDFDDAIYCEPRPRGGYR
LVVAIADVSHYVRPESPLDEEAIRRGNSVYFPDHVVPMLPEKLSNGLCSLNPDVDRLCMV
ADMTISAAGNISGYTFYQAVMRSHARLTYNKASDMLERPDTEQGFRLAAQYADLLPHLHN
LYDLYKLLRRARTERGAIDFETTETKIVFDAERKIEEIVPVQRNDAHKIVEECMLCANVA
TARFLKKHEMPALYRVHDGPSEERLNALRLFLGELGLQLGGGDKPSSADYQALLAEVADR
PDANVIQMVMLRSLSQAVYSPEQSGHFGLGFASYTHFTSPIRRYPDLIVHRAIKSRIHNP
EVKKDIVTPPVTDPELAEYPYDYASMERLGEHVSMTERRADDATRDVMAWLKCEFLKDHE
GEEYDGIIAAVVPFGFFVNLSGIYIEGLVHVSTLSGDYFHHDAAKHRLIGERTAVSFRLG
DEVRVRVVRVGMEDRKIDLELISTPKRRQADRDALDVSKREGPGKGGKRGEKGKGDRGGR
KKGGTSSGSRGQKKPESASPKKGGKPSSAREQLVAEAAKEATKKKSGKASGKSSGANKQR
KPRNSGK
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atggtttccagaaataagaaagaccgggatcctcacgccagtcgtgaggcccaaaaatac
gataaccctattcaaagccgggaatttatcctctcgcatcttaaggatcgcggggctccc
gcaacacatgaaacattgtgttccgagcttggacagaactcgccggaaggtatcgaagcc
ctccgtcggcgcctgattgccatgtgccgggatggccagctgatctgtaaccgccgtggc
gcctacctccctatcgaagaagccgatctggtaacgggcagggtcatcggccacaaggat
ggcttcggctttctggtgccggacgatggtggctccgatctgttcctgacagcgcgccag
atgcgccaggtatttcatggtgaccgggttgccgcccgggttgaccgggtcgatgaccgc
ggtcgccgggagggtgtcattgttgaggtgctggagcatcgtaccgagcagacggttggt
cgattcttcaaggaaagtggtatcgcctttgttgtaccggaaaatgcccggatcaaccac
gaggtattgataccggaggagcatgctggcgaggcatatcacggccagtacgtggtggtg
gaaattctgcgtcagcccacaattcgcacccagccaaccggcagggtgatcgagattctc
ggcgagcacatggcgccgggaatggaaattgatgtcgccatccgttcctacgatattccc
cacagctggccgcctgcagtgggtgagcaggccgcatcgattcccgctgaggttgccgaa
aaagacaaggcaaaccgggtggacatccgcaatatgcggctggtcaccattgacgatgag
agtgcccgggactttgacgacgcgatctactgcgaaccccgtccccgtggtggttatcgc
ctggtggtggcgattgccgacgtgtcccactatgtacggcctgagtctccgctcgatgaa
gaggccattcgccggggcaactcggtgtacttcccggaccatgtggtgccgatgctgccg
gagaaactctccaatggcctgtgctccctgaatcccgatgttgatcgcctgtgtatggtg
gccgacatgaccatcagtgcggccggcaacatcagtggctataccttttatcaggcggtg
atgcgcagccacgcccggctgacctacaacaaggccagcgacatgctggagcggccggat
accgagcagggcttccggctggcggcccagtacgcggatcttctgccgcatctccataac
ctgtacgacttgtataagttgcttcggcgggcgcgtactgagcgtggtgctatcgatttt
gagaccaccgaaacgaaaattgtgtttgatgccgagcgcaagattgaggaaatcgtgccg
gtgcaacgcaacgatgcgcacaagattgtggaagagtgcatgctgtgcgccaatgtagct
acggcccgtttcctcaagaaacacgaaatgccggcactttatcgggtgcatgacgggccc
tctgaagagcgactgaatgcccttcgcctgtttctgggtgagctgggtttgcaactgggt
ggtggagacaagccaagctctgccgattaccaggctctgctggccgaagtggccgaccgg
ccggatgccaatgtgatccagatggtcatgttgcgctcgctcagccaggcggtctacagc
ccggaacaaagcggtcacttcggcctcgggtttgccagctatacccattttacctcgccg
atccgtcgctatccggatctgatcgtgcatcgggcgatcaagtcccgtattcacaatcct
gaagtgaagaaagatatcgtaaccccaccggttacggatcccgagctcgctgaataccct
tacgattatgccagcatggagcggctcggcgagcacgtgtccatgaccgagcgtcgggcg
gacgatgccacccgggatgtcatggcctggctgaagtgcgagttcctcaaggaccatgaa
ggcgaagagtacgatggcattattgctgccgtggtgccgtttggcttctttgtgaatctg
tcgggcatctacatcgaggggctggttcacgtttccaccctcagtggtgactatttccat
cacgatgcggccaagcatcgcctgattggcgagcgcaccgcggtgagcttccgtctgggc
gatgaagtccgcgtgcgggttgtccgcgtggggatggaggatcgcaagattgatctggaa
ctgatcagtactccgaagcggcgccaggccgaccgggatgctctggacgtttccaagcgt
gagggccccggcaagggcggcaagcgcggtgaaaagggtaagggagaccggggcggccgc
aagaaaggcggtacgtcttcaggttcccgtggccagaaaaagccggagagtgcgagcccc
aaaaaaggtggcaagccctccagtgccagggagcagctggtcgcggaagcggcaaaagag
gcgacaaagaaaaagtccggcaaagcgtcgggtaagtcctccggcgccaacaagcagcgc
aagccccgtaattcaggtaagtaa
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