Marinobacter sp. Arc7-DN-1: D0851_17715
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Entry
D0851_17715 CDS
T05619
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mara
Marinobacter sp. Arc7-DN-1
Brite
KEGG Orthology (KO) [BR:
mara00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mara03009
]
D0851_17715 (rlmD)
Enzymes [BR:
mara01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
D0851_17715 (rlmD)
Ribosome biogenesis [BR:
mara03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
D0851_17715 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
PCMT
TRM5-TYW2_MTfase
MTS
Cons_hypoth95
Methyltrans_SAM
Methyltransf_11
RrnaAD
Methyltransf_15
Methyltr_RsmB-F
UPF0020
Methyltransf_23
Ubie_methyltran
PrmA
DNA_methylase
Motif
Other DBs
NCBI-ProteinID:
AXS84695
UniProt:
A0A346S519
LinkDB
All DBs
Position
3768026..3769375
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AA seq
449 aa
AA seq
DB search
MSRRRRKALPKEPVRCDIESLSHDGRGIARQDGKIQFVDGALPGETVIAKVVSSRSKFDE
LRAEQVLEAAPERQAPPCEFADLCGGCSLQHMSGDAQIRFKETTLREHFAHFGGIEPEEW
IEPLRSESSLGYRRKARLGVRYVKARESVLVGFREKRNSFLTDIDRCAVLDPRIGERVLP
LRDMLHDLDAYNRIAQVEVACGDDVAVMVFRNMDELSAGDREKLIAFGQAHDLHIYLQPK
GPDTVHRIWPESAGRDDERLSYRLEEFKLTMKFHPMDFTQVNAGINRAMVHRAVEWLDVQ
PEERVLDLFCGLGNFTLPLARKGGQVVGVEGDETMVVRGRENAELNGLDNVAFHGADLHG
DFTGQSWAKEGFDKILIDPPRSGAEEICTYLTAFGARRIVYVSCNPATLARDAGVMVRNG
YRLVRAGVMDMFPHTTHVESIALFERDSG
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgagcagacgacgcaggaaggctcttcccaaagagcctgtgcgctgtgacattgaatcc
ctgagccacgacggccgggggatcgcccgtcaggacggcaaaatccagtttgtggatggc
gccctgcccggggagacggtgatcgccaaagtggtgtccagccgcagcaaatttgatgaa
ctgcgcgccgaacaggtgttggaagccgcgccggagcgccaggcaccgccctgcgagttc
gccgacctgtgcgggggctgcagccttcagcacatgagtggcgatgcccagatccggttc
aaggaaactaccctgcgtgaacattttgcccacttcgggggcattgaacccgaagagtgg
atcgaacccctgcgctcggaaagcagcctgggttatcgccgtaaggcgcgcctgggggtc
cgttacgtgaaggcccgggaatccgttctggtgggtttccgggagaagcgcaacagcttc
ctgaccgacattgatcgctgcgcagtgctggatccgcgcattggagagcgggtgctgcca
ctgcgcgacatgctccacgacctggacgcctacaaccggattgcccaggtggaagtggcc
tgtggtgatgatgtggctgtgatggttttccgaaacatggatgagctctcggcgggtgac
cgggaaaaactcattgcctttggtcaggcccacgatttgcatatttacctgcaacccaag
gggccggataccgtgcaccggatctggcctgaatctgctggccgggatgacgaacgtctg
agctaccggctggaagaattcaaactgaccatgaaatttcatcccatggactttacccag
gtcaatgcaggcatcaaccgggcgatggtacacagggctgtcgagtggctggatgtgcag
ccagaggagcgggtgctggatctgttttgcggccttggcaacttcaccctgccgctggcc
aggaagggtggccaggttgttggcgtggaaggcgatgagaccatggtcgtccgtggtcgg
gaaaacgcggaactaaacggtctggataatgtcgcttttcacggcgccgatctgcatggg
gatttcacgggacaaagttgggcaaaggaagggttcgacaagatcctgattgatccgccc
cgttccggtgccgaagaaatctgcacgtacctgacggcattcggggcccggaggattgtc
tatgtgtcctgcaatccggccaccctggcgcgggatgcgggggtgatggtgcgcaacggc
tatcgtctggtgcgcgcgggtgtgatggacatgtttccccacaccacccatgtggaatcc
atcgcgctgttcgagcgggattccggctga
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