Maribacter cobaltidurans: CJ263_17250
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Entry
CJ263_17250 CDS
T05023
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
marb
Maribacter cobaltidurans
Pathway
marb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
marb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJ263_17250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
marb03019
]
CJ263_17250
Enzymes [BR:
marb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CJ263_17250
Messenger RNA biogenesis [BR:
marb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CJ263_17250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
CMS1
DUF2608
RraA-like
ANIS5_cation-bd
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
ASV31822
UniProt:
A0A223V938
LinkDB
All DBs
Position
complement(3855836..3857128)
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AA seq
430 aa
AA seq
DB search
MTFKELGLAEPILKAVEAEGYTHPTPIQQQAIPVLLQKKDLLGVAQTGTGKTAAFGIPIL
HHLYESISLNQKSRKVKALIVTPTRELAIQIGESMTAYGKYTGLRNTVIFGGVKQGKQVN
ALKSGVDILIATPGRLLDLMNQGYISFRDLEFVVLDEADQMLDMGFIHDVKKIIAKLPAK
RQSLFFSATMPQAIVQLSKSMLGDFERVTIKPEQATAEKVEQGIYFVSKQNKPKLLVHLL
NERPKDSVLVFSRTKHGANKIVKKLSQAGIKSAAIHGNKSQTARQKALGDFKDGKLRVLI
ATDIAARGIDVDELSLVVNYDLPNVSETYVHRIGRTGRANASGIALSFCDKDERPYLRDI
EKLIKQSVPRMPEHQFVDDTPEEKNDRPARPSKGSGSSGTKNRTGGKNFRGKNNRNTSKP
KKRNDSRSRN
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaagaactcggcttagccgaacccattctaaaggccgtagaagctgaagga
tatacccaccctaccccaatacaacaacaggccattcctgtattattacaaaagaaggat
ttattaggtgtagcccagaccggtaccggaaagaccgctgcttttggaattccgatcctt
caccatttatatgaaagcattagccttaatcagaaatcaagaaaagtaaaagccttgatc
gtaacacccacacgggaattggccatacaaattggtgaaagcatgaccgcctatggaaaa
tataccggattaagaaatacggtgatttttggaggggttaaacaaggcaaacaagtgaat
gccctgaaaagtggcgtagatatcctaattgctacccctggtaggcttttggatcttatg
aaccaaggttatatttcttttagggaccttgagtttgtggttttggacgaagcagaccag
atgttggatatgggctttattcatgatgtgaagaaaatcatagcgaaactacctgctaaa
aggcaatcgcttttcttttccgcaaccatgccacaagccatcgttcaactgtccaaatcc
atgttaggtgattttgaacgtgtgaccatcaaaccggagcaggccacggcggaaaaggtt
gaacaaggtatttactttgtaagtaagcaaaataaacctaagcttttggtgcatttgtta
aacgaaagaccaaaagactcggtattggtattttcccgcacaaaacatggtgccaataaa
atcgtaaaaaaattatcgcaggccggtatcaaatctgctgccatccacggaaataagtcg
caaaccgccagacaaaaggctttgggtgattttaaagatggtaagctaagggttttgatc
gctaccgatatcgcagcccggggcattgatgtggacgaactttccttggtggtaaattac
gatcttcccaacgtatcggaaacctatgtgcatagaattggtaggacaggaagggcaaat
gccagcggtatcgcattgtcgttctgcgataaggacgaaagaccctacctccgagacatt
gaaaagctgataaagcaatctgttcctcgaatgccggagcatcagtttgtggacgatact
cctgaagagaaaaatgatcgacctgcaagaccatctaaaggctcaggaagttcaggtact
aaaaacagaactggcggcaagaatttccgaggaaaaaataacaggaatacaagtaaacct
aaaaagcgaaatgattctagaagcagaaactag
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