Maribacter cobaltidurans: CJ263_17805
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Entry
CJ263_17805 CDS
T05023
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
marb
Maribacter cobaltidurans
Pathway
marb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
marb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJ263_17805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
marb03019
]
CJ263_17805
03009 Ribosome biogenesis [BR:
marb03009
]
CJ263_17805
Enzymes [BR:
marb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CJ263_17805
Messenger RNA biogenesis [BR:
marb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CJ263_17805
Ribosome biogenesis [BR:
marb03009
]
Prokaryotic type
rRNA helicases
CJ263_17805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ASV31920
UniProt:
A0A223V9V7
LinkDB
All DBs
Position
complement(3983331..3985118)
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AA seq
595 aa
AA seq
DB search
MTKFEALGLNQSLLNAVSDMGFESPSEVQEKAIPILLESDTDLVALAQTGTGKTAAFGFP
LIQKIDGNSRTTQGLILSPTRELCLQITNELQLYSKYEKNISVVAIYGGASITEQARQIK
RGAQIVVATPGRMKDMISRGLVDITKIDYCVLDEADEMLNMGFFEDIQDILSNTPNEKST
WLFSATMPKEVSVIAKKFMHSPQEITVGTKNSGASTVQHEYYVVSGRDRYPALKRLADTN
PDIFSVIFCRTKRDTQKVAEKLIEDGYNAGALHGDLSQNQRDLVMNAFRKKQIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIITRSELRKIKAIENK
IKQDFIQKNIPTGIEICEIQLYHLANKIKDTKINPEVDSYLPAINDVLKGIDREELIKKI
VSVEFTRFFNYYNKTKDLNSSPERSNDDGRVSYSDNGNGSVRYFINVGEKDGYDWMSLKD
FIRDTVGLGKEDVYKVDVKESFSFFNTEASVTEQILSTFTEFKVDGRFVNVEVSKNPGGG
GGGGKRRGKGGKDKGKRRNSFKGEDKGRGKGRDRGNSSSPNSGKRRSKKRKGDFF
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagtttgaagcattgggactaaaccagtccttattgaatgctgtgtcggacatg
ggatttgaatccccatccgaagtacaggaaaaagcaatccccattttattggaaagtgac
acggacctagtggccctggcccaaacaggtacaggaaaaacagctgctttcgggtttccc
ctaattcaaaaaattgatggtaacagccgcacgacccaagggttgattctctccccaacg
agagaactttgcttgcagattaccaatgaactacagctatattccaaatatgaaaagaat
attagcgtggtggccatttacggtggtgccagcatcacggagcaggctagacagataaaa
cgaggagcccaaattgtggtggcaacgccagggagaatgaaagacatgatcagtagaggt
ttggtggatattaccaaaattgactattgtgtacttgatgaggccgacgaaatgctgaat
atgggcttctttgaagatattcaggatattctctccaatacacccaatgaaaaatccact
tggttgttttcggctactatgccaaaagaagtgtcggtcattgccaaaaagtttatgcat
tccccacaggaaattaccgtgggaaccaaaaattccggagcctcaaccgtgcagcatgag
tattatgtagtaagtggcagggatcgttacccagccttaaaaagacttgcagataccaat
ccggatatattttcagtgattttctgtagaaccaagagggacacacaaaaagtagccgaa
aaattgatcgaggatgggtataatgccggtgctttgcacggggacctcagccagaaccaa
cgagatttggtcatgaacgccttccgaaagaagcaaattcaaatgttggtagcaacggat
gtcgcagcaagaggtatcgatgttgatgacattacccatgtcatcaattatcaactcccg
gatgaaatagagacctatacacacagaagtggtagaacaggtagagctggaaaatccgga
atttcaatggtcatcattacgcgtagtgaattgcgcaaaataaaggctattgaaaataag
ataaaacaggatttcatccagaaaaatattcccacaggtatagaaatatgtgagatacag
ttgtatcaccttgccaataaaatcaaggataccaaaataaaccctgaggtagatagctat
ttacctgcaattaatgatgttttaaaaggaattgaccgggaagagcttatcaagaaaatt
gtttccgtagaattcactaggttcttcaattactataataagaccaaagatttaaactct
tccccggaaaggtccaatgatgacggtagggtttcctattcggacaatggaaatggctcg
gtccgctattttatcaatgttggggagaaggatggttatgattggatgtcccttaaggac
tttatccgtgataccgtaggcctaggaaaggaagatgtatacaaggtggatgtaaaggaa
agtttttccttcttcaatacagaagcatcggttaccgaacaaattcttagcacatttacc
gaatttaaggtagatggccgttttgttaatgttgaagtctccaaaaaccccggaggcgga
ggcggaggaggtaaacgtcgtggtaaaggcggtaaggacaaaggaaaaagaagaaacagt
tttaaaggcgaggacaagggccgtggcaagggtagggatcgaggaaattccagcagtccc
aactccggaaagagaagaagcaaaaaacgaaaaggtgatttcttttag
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