Methanogenic archaeon ISO4-H5: AR505_0052
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Entry
AR505_0052 CDS
T04272
Name
(GenBank) cell division control protein Cdc48
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
marc
Methanogenic archaeon ISO4-H5
Pathway
marc04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
marc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
AR505_0052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
marc03019
]
AR505_0052
03009 Ribosome biogenesis [BR:
marc03009
]
AR505_0052
04131 Membrane trafficking [BR:
marc04131
]
AR505_0052
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
marc04147
]
AR505_0052
Messenger RNA biogenesis [BR:
marc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
AR505_0052
Ribosome biogenesis [BR:
marc03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
AR505_0052
Membrane trafficking [BR:
marc04131
]
SNARE
SNARE associated proteins
Others
AR505_0052
Autophagy
Aggrephagy
Other aggrephagy associated proteins
AR505_0052
Exosome [BR:
marc04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
AR505_0052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_5
AAA_2
AAA_14
TIP49
AAA_33
AAA_22
CDC48_2
AAA_25
nSTAND3
AAA_28
Mg_chelatase
AAA_7
RNA_helicase
SLFN-g3_helicase
Parvo_NS1
ABC_tran
AAA_lid_PRS2_C
bpMoxR
AAA_24
Sigma54_activat
IstB_IS21
ATPase
AAA_18
NPHP3_N
Sigma54_activ_2
Vps4_C
AAA_3
AAA_17
AAA_19
TsaE
DUF815
ResIII
ATP-synt_ab
Motif
Other DBs
NCBI-ProteinID:
AMH93774
UniProt:
A0A0X8UX09
LinkDB
All DBs
Position
complement(57713..59938)
Genome browser
AA seq
741 aa
AA seq
DB search
MVEVLTMKVDIPKRITEAGYGRARLDPEAYTKLGLSIGNIIEITGKKTVVAKVFRSDNED
EGTNVIRIDGLTRTSAEVSLGENVKVRKCDPQRAEKIILEPKIPEGSRINVDKGFTEIFK
NNLISRPVVAGMDITVQNISLMGNRSIFNVVSTVPQGAVVVSSITDLVILEEPKKRKSTA
KPEEGGIGRDNKNTTYDDIGGLNDELRRIREMSELPLKHPELFERMGISAPKGLLLYGPP
GTGKTLIAESLANESGANFFSIRGPEIMSKYYGESESKLRTLFQTAEKNSPSIIFLDEID
SIAPNRDSAYGEQERRVVAQLLSLMDGMGGRGNVIVIGATNREDSIDPALRRPGRFDREI
EIGVPNKQGRETILGVHTRNMPLADDVDLAALARMTQGFVGADLAALAREAAMKCLSRQM
LKLDLDKPVPSELLETIKVNMKDFVDALSEVEPSGMREVSIEVPKVTWADIGGLDSVRRE
IQETLLPEEDKKDFERLGITPGKGVLLYGPPGTGKTLIAKAVANESGANFILVNGPEIAS
KWMGESEQAIRKIFKRAKQMAPSIIFFDEIDSIAPKRGSEDNEAWERVVAQLLTSLDGVE
QLNHVLVMAATNRPDMLDPALLRPGRIDRLVLIGKPDTKGRVSILKIHTKNMPLADNVDL
EAIADATSGYVGADLFALCREAGLHAYRKNHDTKTVSAEDFEAALKIIKPSVDDNVFKAY
EKMGTEIKKRKDRWNDVPFYS
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atggtcgaagttctgacgatgaaagtggacatccccaaacgcatcaccgaggccggttac
ggacgtgcgcgtctagatccggaagcctacaccaaactgggcctctcgatagggaacatc
atcgagatcaccggcaagaagaccgtggtcgccaaggtgttcaggagcgacaacgaggac
gaggggaccaacgtcatcaggattgacggacttaccaggaccagcgcggaggtctccctc
ggggagaatgtcaaagtccgcaaatgcgacccccagagggccgagaagatcatcctcgag
cccaagattcctgagggttcacgcatcaacgtcgacaagggcttcaccgagattttcaag
aacaacctcatcagccgtcccgtcgtggcgggcatggacatcaccgtccagaacatctcg
ctgatgggcaacagatccatcttcaacgtggtctccaccgtcccccagggggccgtggtg
gtctcgtccatcaccgacctggtcatcttggaggagcccaagaagcgcaagagcaccgcc
aaacccgaagagggcggcatcggcagggacaacaagaacaccacctacgacgatatcgga
ggactcaacgacgaactgcgccgcatcagggagatgagcgaactccccctgaaacatccc
gaactgttcgagaggatgggtatctccgcccccaagggactcctgctctacggccctccc
ggaaccggaaagacgctcatcgccgaatccctggccaacgaatccggagcgaacttcttc
tcgatccgcggaccggagatcatgagcaagtactacggtgaatcggagagcaagctccgt
acactgttccagacagccgagaagaactcccccagcatcatcttcctcgacgagatcgac
tccatcgcccccaaccgcgacagcgcctacggggagcaggaacgccgcgtggtcgcacaa
ctgctgtccctgatggacggcatgggaggaagggggaacgtcatcgtcatcggtgccacc
aaccgcgaggattcgatagacccagcactcagaagacccggccgtttcgacagggaaata
gagatcggtgtccccaacaaacagggcagggagaccatcctcggggttcacacccgcaac
atgcctctggcagacgatgtggacctggcggccctcgcccgcatgacccagggattcgta
ggtgcagaccttgccgccctcgcccgcgaagcggccatgaaatgcctgagcaggcagatg
ctcaaactcgaccttgacaaacccgtccccagcgagctgctcgagaccatcaaggtcaac
atgaaggatttcgtcgacgccctcagtgaggtggaacccagcggtatgcgcgaggtctcc
atcgaggtacccaaggttacctgggccgacatcggaggactcgacagcgtccgcagggag
atccaggagaccctcctgcccgaggaggataagaaggatttcgagaggctcggcatcact
cccggcaagggagtcctgctctacggccctcccgggaccggaaagacgctcatcgccaaa
gcggtggccaacgaatcgggtgccaatttcatccttgtcaacggtcccgagatagccagc
aaatggatgggagagagcgagcaggccatccgcaagatcttcaaacgcgccaaacagatg
gctccgtccatcatattcttcgatgagatcgactccatcgcacccaagaggggttcggaa
gacaacgaggcgtgggagcgtgtggtcgcgcagctgcttacctcgctcgacggtgtcgaa
cagctcaaccacgtgctggtcatggccgcgacgaaccgtccagacatgctggacccggcg
ctcctcaggccgggacgcatcgaccgtctggtgctcatcggcaaaccggacaccaaggga
agggtcagtatcctgaagatccacaccaagaacatgcccctggcggacaatgtggacctg
gaagcaatcgccgacgcgacttcgggttatgtcggtgccgaccttttcgcactgtgccgc
gaagcgggactgcatgcttaccgcaagaaccacgatacgaagaccgtgtcggccgaggac
ttcgaggccgcattgaagatcatcaaaccctcggtggatgacaacgtcttcaaggcctac
gagaagatgggcaccgagatcaagaagaggaaggaccgctggaacgacgtcccgttctat
tcctga
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