Methanogenic archaeon ISO4-H5: AR505_0054
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Entry
AR505_0054 CDS
T04272
Name
(GenBank) DNA-directed RNA polymerase subunit B RpoB
KO
K13798
DNA-directed RNA polymerase subunit B [EC:
2.7.7.6
]
Organism
marc
Methanogenic archaeon ISO4-H5
Pathway
marc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
marc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AR505_0054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
marc03021
]
AR505_0054
Enzymes [BR:
marc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AR505_0054
Transcription machinery [BR:
marc03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
AR505_0054
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-ProteinID:
AMH93776
LinkDB
All DBs
Position
60560..64225
Genome browser
AA seq
1221 aa
AA seq
DB search
MIFLRDLVKLYFKDKDIVNHHVESFNDFLANVHDSDKAGTDKIVSENLNSRMQRIVDDIR
VPTDDAERGIIRLDPERTNGKDIEIHIGRKRDKNGNIIAQSESTIRIHPPEVTEANGYKH
KLSPMEARLRNLNYMSSVEVHFEVYEDGVKKDLPDEWIHIGEIPMMVRSNGCNLNREIVN
QSQDRTLTEEEYKQYLIAQKEDPREPGGYFIIGGTERVLITLEDLAPNRVMVEYSERYGA
AVETAKVFSQKEGYRALTQVEKKKDGTLMVSVPVVPQEIPLVALMKALGMESDKEIHDTI
CSDDAMELTVMANIENSFNTKDWLPNGFHTQEDAIAYLERNFAAGQAKEYRTKKVESILD
RSLLPHLGDTKDARKKKAIFLGRIAKSVLELSLKNRKEDDKDHYANKRLKLSGDLMEDLF
RTSFTSLIKDLKYQLERNFGRKKYDYNIASAIRPDLFTHKLIHALATGNWVGGRAGVSQL
LDRTSNMSAMSHLRRITSSLTRSQPHFEARDLHPTQWGRLCPSETPEGQNCGLVKNAALI
IDVSHACNERDVFKLLKELGLDTVNEEETRVFLNGDLVGTSRDPQRLVDELRNRRRYGLI
ANTINVHYDTAMEEIIINCDEGRLRRPLLVLKDGKTVLTRKHLEAIRESLADENHTGFTW
DDLFGEGIIEWLDAEEEEDAYVLVSPYDLPHRCPCCGHALSETDVDWMNPGKAEDCELTC
RWCNGKFTLPSNITPEHTHLEVDPMIILGVAAGIVPYPEHNSAPRITMGAGMAKQALGIA
TANYRIRPDTRGHLMHYPQVPLVQTQTMDFMGYKYRPAGQNFCIAVMCYHGYNIEDAIVM
NRSSVQRGLGRSTFMRSYRAEERLYPGGTADKFQIPSPDVVGVRADEAYAHLGEDGLISP
ESYVEGSDVLIGKTSPPRFLEEDTGSMLSTQKDRETSVTVRPGEKGYVDSVIVTASENGS
RLVRVKVRDERIPELGDKFCSRFGQKGVVGRLVDQCDMPFTSDGITPDIIVNPHGIPSRM
TVGHVLEMIAGKVGSMEARTIDGTAFSGESEDSIRDGLVRNGFARSGKEIMYDGRTGHMV
EADIYTGVIFYEKLHHMVSGKLHYRSRGPVQILTRQPTEGRSRQGGLRFGEMERDCLIGH
GVSMVIKDRLLDQSDGTQQYVCGNPNCGHIAITDRQGQCYCPVCKSNTNIHLVQTSYAFK
LLMDELLSLGVAMRLQLEDLS
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
gtgatatttttgagggatttagtcaagttatacttcaaggacaaagacatcgtcaaccac
catgtcgagtccttcaacgacttcctcgccaacgtccacgactcggacaaggcaggcacc
gacaagatcgtctccgagaacctcaacagcaggatgcagaggatcgtcgacgacatcagg
gtccccaccgacgacgcagagaggggtatcatcaggctcgaccccgagcgtaccaacgga
aaggacatcgagatccacatcggaaggaagagggacaagaacggaaacatcatcgcccag
agcgagtccaccatcaggatccaccctccggaggtcaccgaggccaacggatacaagcac
aagctctcccccatggaggccagactcaggaacctcaactacatgtccagcgtcgaggtc
cacttcgaggtctacgaggacggagtgaagaaggatctgccagacgagtggatccacatc
ggagagatccccatgatggtcaggtccaacggatgcaacctgaacagggagatcgtcaac
cagtcccaggaccgcaccctcaccgaggaggagtacaagcagtacctcatcgctcagaag
gaggacccccgtgagcccggaggatacttcatcatcggaggaaccgagagggttctcatc
accctcgaggatctcgcccccaacagggtcatggtcgagtacagcgagaggtacggtgcc
gccgtggagactgccaaggtcttctcccagaaagagggataccgtgcactgacccaggtg
gagaaaaagaaggacggaaccctgatggtttccgtccccgtcgtcccccaggagatcccc
ctcgtcgcccttatgaaagcactcggaatggaatccgataaagagatccatgacaccatc
tgttccgacgacgccatggagctcaccgtcatggccaacatcgagaactccttcaacacc
aaggactggctgcccaacggattccacacccaggaggatgccatcgcatacctcgagagg
aactttgccgccggtcaggcaaaggaatacaggaccaagaaggtcgagtccatcctggac
cgctccctgctcccccacctgggtgacaccaaggacgccaggaagaagaaggccatcttc
ctcggccgtatcgccaagtccgtcctcgagctctccctcaagaacaggaaagaggacgac
aaggaccactacgccaacaagaggctcaagctgtccggagacctcatggaggatctcttc
aggaccagtttcacctctctcatcaaggatctgaagtaccagcttgagaggaacttcggc
aggaagaagtacgattacaacatcgcatccgccatccgccccgacctcttcacccacaag
ctaatccacgcccttgcaaccggtaactgggtcggaggacgtgccggagtgtcccagctt
ctcgacaggacctccaacatgtccgccatgtcccacctcaggaggattacctcctccctg
accaggagccagcctcacttcgaggcccgtgaccttcaccctacccagtggggaaggctg
tgcccctccgagacccccgagggtcagaactgcggtctggtgaagaacgccgccctcatc
atcgacgtctctcacgcctgcaacgagcgcgacgtattcaagctcctgaaggagctggga
cttgacaccgtcaacgaggaggagacccgtgtgttcctcaacggtgacctggtcggaacc
tcccgcgatccccagaggctcgtcgacgagctcaggaaccgcaggaggtacggactcatc
gccaacaccatcaacgtgcactacgacaccgcgatggaagagatcatcatcaactgcgac
gagggccgtctcagaaggcccctgctcgttctcaaggacggaaagaccgtcctcaccagg
aagcacctggaggccatccgcgagagtctcgccgacgagaaccacaccggattcacctgg
gacgacctcttcggagagggaatcatcgagtggcttgacgcagaggaagaggaggacgca
tacgttcttgtctccccctacgacctgccccacaggtgtccctgctgcggtcacgcactg
tccgagaccgacgtcgactggatgaaccccggaaaagccgaggactgcgagctcacctgc
aggtggtgcaacggcaagttcaccctgccctccaacatcacccccgagcacacccacctc
gaggtcgaccccatgatcatcctgggagtcgccgccggtatcgtcccctaccccgagcac
aactccgcaccccgtatcaccatgggtgcaggaatggctaagcaggccctcggaatcgct
accgccaactaccgtatcaggcccgacacccgcggacacctgatgcactacccccaggtc
cctctggtacagacccagaccatggacttcatgggctacaagtacaggcccgcaggacag
aacttctgtatcgcggtcatgtgctaccacggatacaacatcgaggatgctatcgttatg
aacaggtcctccgtgcagaggggtctcggaaggtccaccttcatgaggtcctaccgtgcc
gaggagcgtctctaccccggaggaaccgccgataagttccagatcccctcgcccgatgtg
gtcggcgtccgcgccgacgaggcatacgcacacctcggagaggacggtctcatctccccc
gagtcctacgtcgagggatccgatgtcctcatcggaaagacctctccccccaggttcctc
gaggaggataccggaagcatgctgtccacccagaaggacagggagacctccgtcaccgtc
aggcccggagagaaaggatacgtcgactctgtcatcgtcaccgccagcgagaacggctcc
aggctcgttcgcgtaaaggtcagggacgagaggatccccgagctcggtgacaagttctgt
tccaggttcggacagaagggagtcgtcggaaggctcgtcgaccagtgcgacatgcccttc
acctccgacggtatcacccctgatatcatcgtcaacccccacggtattccttcccgtatg
accgtcggacacgtccttgagatgatcgccggtaaggtcggatccatggaggcacgcacc
atcgacggtaccgccttctccggagagtccgaggactccatccgtgacggactcgtcagg
aacggtttcgcaaggtccggaaaagagatcatgtacgacggaaggaccggacacatggtc
gaggccgacatctacaccggagtcatcttctacgagaagctgcaccacatggtttccgga
aagctgcactacaggtccaggggacccgtgcagatcctcactaggcagcctaccgaggga
cgttccaggcagggaggtctcaggttcggagagatggagcgtgactgtctgattggtcac
ggtgtatccatggtcatcaaggaccgtctcctcgaccagtccgacggaacccagcagtac
gtctgcggcaacccgaactgcggtcacatcgccatcaccgacaggcagggccagtgctac
tgtcctgtctgtaagagcaacacgaacatccacctcgtgcagacctcctacgcgttcaag
ctcctcatggatgagcttctgtcgctgggtgtagccatgaggcttcagctggaggacctt
tcatga
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