Methanogenic archaeon ISO4-H5: AR505_0814
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Entry
AR505_0814 CDS
T04272
Name
(GenBank) DNA repair helicase Rad3
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
marc
Methanogenic archaeon ISO4-H5
Pathway
marc03022
Basal transcription factors
marc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
marc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
AR505_0814
09124 Replication and repair
03420 Nucleotide excision repair
AR505_0814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
marc03021
]
AR505_0814
03036 Chromosome and associated proteins [BR:
marc03036
]
AR505_0814
03400 DNA repair and recombination proteins [BR:
marc03400
]
AR505_0814
Enzymes [BR:
marc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
AR505_0814
Transcription machinery [BR:
marc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
AR505_0814
Chromosome and associated proteins [BR:
marc03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
AR505_0814
DNA repair and recombination proteins [BR:
marc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
AR505_0814
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
ResIII
DEAD
Helicase_C
Zn_ribbon_3
nSTAND3
DZR_2
nSTAND_NTPase5
Zn_Ribbon_1
Utp25_C
DZR
AAA_19
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AMH94535
LinkDB
All DBs
Position
865347..867395
Genome browser
AA seq
682 aa
AA seq
DB search
MKTRFCPNCGSMTFPGMPRCSSCGMPLDGSVENWSPPPKSDGPKIIAAVNPSAPYLPYEP
REVQLDIIKDIRTALEAGKHIVIESGTGTGKTITSLAGSLEFAKAHGKKIIYITRTISQS
DQVMKELKAISTLKPVSGITLTGRNKSCPLLQSRSDFDNLSPNALSTLCSDRKQRSQQGR
SGGCPYFDQVSHQMDTVEAYCKRAFPKSDEIDAYCRGLKVCPYEVKKVMMKDFDVIVAPY
IHIIDPDIRDNFLSVLDVEPKDIVLIVDEAHNLMDAVREQESFSINLRLVNSALDECGVL
KKPEVADGVAIDELVKAVKNSMRDLASGRIAFGGTEALLKADELEESLCKMLGTDRQHLG
MMVERMNEIGENRQDAIADTDAPSCPLLELAVLLRRWVKSPSDRYVKAVRVNEDGEVLTA
GCIDPVDIGKFMNELKGAVHMSGTLQPLSTYAKVLGLPMDSIPRTYPSPFPKENKLVIYS
KDLTTNYQELQRNPAMKQQLQRTVAQLCNAVDKNILVFMPSYRVMKEMRPYLEEAIYKNL
YWEESGRQKKTMAALDQFRSGRSGVFVCVMGGSIAEGMDFPGDELCFAVIVGIPYPPPSL
EIKAMKDMFDQKYGPGFGWRLTSQIPAVRKMRQAIGRLIRTPTDRGMAVILDNRAARDAR
QLEAVPSDDPVADAVKFFAKKA
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgaagacaaggttctgtcccaactgcgggtctatgacattccccggaatgccccgctgt
tcttcctgcggaatgcctctcgacggatccgtcgagaactggagtcctccgcctaagagc
gacggtcctaagatcatcgcagctgtgaacccttccgccccttatcttccgtacgaaccg
agggaggtgcagttggatatcatcaaagatatccgcaccgctttggaagcggggaagcac
attgttatcgaatcggggaccggtaccggtaagaccatcacctcccttgcaggatccctc
gaattcgccaaggcccacgggaagaagatcatctacatcacccgtaccatctctcaatcg
gatcaggtcatgaaggagctgaaggccatctccaccttgaagcccgtgtccggaatcacg
cttacgggaaggaacaaatcctgtcctcttctccagtcccgttcggatttcgataacctg
tcgccgaacgcattgtccaccctgtgctccgacaggaagcagaggagtcagcagggacgc
agcggaggctgcccctacttcgaccaggtaagccatcagatggataccgtcgaagcgtac
tgcaaacgtgccttccccaaatccgatgagattgatgcctattgcagaggactcaaagtc
tgtccctacgaagtcaagaaggtgatgatgaaggacttcgatgtcatcgtcgcgccctac
atacatatcatagacccagacatcagggataacttcctgtcggtgctcgatgtggagccc
aaggatatcgttctcatcgtggatgaggcgcacaacctgatggatgccgtcagggagcag
gagagcttctctatcaatctcaggttagtcaattcggccctcgacgaatgcggtgtgctg
aagaaaccggaagtagccgacggcgtggccatcgacgaacttgtgaaagcagtcaagaac
tcgatgcgtgacctggccagcggaaggatcgcattcggagggaccgaggccctgctcaaa
gcggatgaactcgaggaatccctctgtaaaatgctcggaaccgacaggcagcacctcggc
atgatggtcgagaggatgaacgagatcggcgagaacaggcaggatgccatcgccgatacc
gacgcaccttcctgtcctctgctcgaactcgcggtactgctccgcaggtgggtaaagtct
ccctccgacagatatgtgaaagcggtccgcgtcaacgaggacggtgaggtcctcaccgcg
ggatgcatcgatccggtggacatcgggaagttcatgaatgagctcaaaggggctgttcac
atgtccggaactctgcagcccttatccacttacgcgaaggttctgggtcttccgatggat
tccattccccgcacctatccttcaccgttccccaaggagaacaaactcgtcatctattcc
aaggatctgaccaccaactatcaggaacttcagaggaatcccgccatgaagcagcagctg
cagcgtaccgtcgcccagctctgcaatgcggttgacaagaacatcctggtcttcatgccg
tcataccgtgtgatgaaggagatgagaccctatctggaggaggccatctacaagaatctc
tactgggaagaatccggcaggcagaaaaagaccatggccgccctcgatcagttcaggagc
ggccgttcgggtgtcttcgtctgtgtcatgggcggttccatcgcggaaggaatggacttc
cccggcgatgaactgtgttttgcagtcatcgtaggcataccgtaccccccgccgtctctg
gagatcaaggccatgaaggatatgttcgaccagaaatacggtccaggtttcggttggagg
ctgaccagtcagattcctgcggtcaggaagatgagacaggccatcgggcgtcttatcagg
actcccacggacagaggtatggccgtgattctcgacaaccgtgctgcccgcgatgccaga
cagctggaagccgtcccctctgacgaccctgtggcagatgccgtcaaattttttgcgaaa
aaagcgtaa
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