Methanogenic archaeon ISO4-H5: AR505_0886
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Entry
AR505_0886 CDS
T04272
Name
(GenBank) type III restriction endonuclease
KO
K19789
DNA repair protein RadD
Organism
marc
Methanogenic archaeon ISO4-H5
Brite
KEGG Orthology (KO) [BR:
marc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
marc03400
]
AR505_0886
DNA repair and recombination proteins [BR:
marc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
AR505_0886
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Gene cluster
GFIT
Motif
Pfam:
ResIII
DEAD
Helicase_C
SWI2_SNF2
AAA_11
SLFN-g3_helicase
Terminase_6N
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AMH94607
UniProt:
A0A0X8V128
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Position
936938..938569
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AA seq
543 aa
AA seq
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MEKGSQVEKASSNNRRISTVLSRCTGDWSNFISLTCWNVIRYRKEYYSNVDRIVEYVLMV
THDGQDIILNKESRRRLIQLLNNEEILDLADRVGIKKTEYPYKAVIYKKMDSSVRDVMLD
YFDVPPIPDNDADDLPNKEDIEASYPLHDYQKDVLLRGLALYDNPANNNFMIHMPTGSGK
TRVAMSLISRILIKSENTVVLWLAYSEELCEQAVSEFKKAWAHIGDRSISVYRFYGDKEF
IAPKDGLFVAGLSKLWNKAKDPTFISHFSTNISAVIFDEAHQSLAPTYYEMLQALKLFNH
KIRFIGLSATPGRTDELEYSQLSEFFGHNKVTLRIKGYDSPIRYLYDAGYLAKPVFHQVE
YESGESVIDNTDELDYGKQVLNKLGNDTKRNFVIIDEVIKYVKVYSHKRIVVFAASVASA
EMISAMINLNGIKSLVLTSNTDKSLRTNIIDEFKSDVDYPIILCNYGILTTGFDVPKITA
AFIGRPTKSLILYSQMVGRALRGTRMGGTDTADLVIVVDLDLPGSTSVIKAFEEWNNDEW
TEQ
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atggagaagggctcacaagtggaaaaagcgtcctccaataatagacggattagtacggtc
ttaagcagatgtactggtgactggtcaaatttcatcagtttaacctgctggaacgttatt
aggtatcgcaaagagtattattcaaacgtagatcgcatcgtcgagtatgttctcatggta
actcatgatgggcaagacataattcttaacaaagaatctcgcagacgcctaattcaattg
ctgaataacgaagagattttggatttagccgatcgtgttggcattaaaaagactgaatat
ccttacaaagcagttatctacaaaaaaatggattcttcagttcgggatgtaatgctggat
tattttgatgttccccccatcccagataatgatgcagatgatttacccaataaagaggat
atagaggcatcctatccactacatgattatcagaaagatgtacttctccgtgggcttgct
ctgtatgataatccggcaaataataattttatgattcacatgcccacaggatcgggaaaa
actagagttgctatgagtttgatctccagaatactaataaaatcggaaaatactgtcgtt
ttatggttggcatatagtgaagaattgtgcgagcaggcagtttccgaattcaaaaaagct
tgggcccacattggagatcgttcaatatccgtttatcgcttttatggcgataaggagttc
attgctccgaaagatggcttattcgtggctggactatctaaattgtggaataaggccaaa
gatccaacttttatctcccatttttctactaatatctctgcagttatttttgatgaagct
catcaatcgttagctccgacatattacgaaatgttacaagctttaaaactgttcaatcac
aaaatacgctttatcgggttatctgccacgccaggtagaacagatgaactcgaatattca
caattatccgaatttttcggccataataaagtcaccctaagaatcaaaggctatgattcg
cccataagatatctctacgatgcaggatatttagcaaaacctgtttttcatcaggtagaa
tatgaatctggcgaaagtgttatagataatacagacgaacttgattacggaaagcaagta
ctgaacaaattgggaaatgatactaaacgtaattttgtcattattgatgaagttatcaag
tacgttaaggtgtattcccataagcgtatagttgtatttgctgcgtccgtcgctagtgca
gaaatgatatccgcaatgattaatcttaatggtattaagtcactcgttttgacttccaat
acagataaatctctgagaacaaacattattgacgaattcaaatctgacgtagattaccca
attattttgtgtaactacggtattttaacaacgggttttgacgtcccaaagataactgcc
gctttcattggacgcccgacaaaatcattaattctctattcccaaatggtgggtcgtgca
ttaaggggcactagaatgggcggtactgatacagcggatttagtaattgtagttgattta
gatcttccagggtctacaagcgtaattaaagctttcgaggagtggaataatgatgaatgg
actgaacaatga
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