Methanogenic archaeon ISO4-H5: AR505_1484
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Entry
AR505_1484 CDS
T04272
Name
(GenBank) exosome complex RNA-binding protein Rrp4
KO
K03679
exosome complex component RRP4
Organism
marc
Methanogenic archaeon ISO4-H5
Pathway
marc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
marc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AR505_1484
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
marc03019
]
AR505_1484
Messenger RNA biogenesis [BR:
marc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
AR505_1484
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
AR505_1484
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
KH_6
KH_1
RRP4_S1
ECR1_N_2
RRP40_S1
S1
KH_2
KH_KRR1_2nd
KH_KhpA-B
CMV_1a
KH_N4BP1_2nd
Motif
Other DBs
NCBI-ProteinID:
AMH95199
UniProt:
A0A110A349
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All DBs
Position
1575925..1576665
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AA seq
246 aa
AA seq
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MITFKSDKMEKRSARRTREIVIPGDVLGNADEYKAGENAYELDGKIRANVVGTKTYTNDA
VGVTVMGGFYMPVTGDTVIGIINDVGPSNWMLDINAPYPAPLHVSEVPWKVEFGDTSRFL
TVGDVVLLKILMVDESKKIQVTMKDSGLRKIEGGQLVEISYSKISRVIGKSGSMIQMLKN
MTDCRIFVGQNGRIWIDGDGENVDVAAEAIRIIERESRSANLTDRVREFIEKRLPQSEED
EEEDSE
NT seq
741 nt
NT seq
+upstream
nt +downstream
nt
atgattacattcaagagtgataaaatggaaaaaagaagcgccagaaggacacgtgagatc
gtgatccccggagacgtgctcggcaatgctgacgagtacaaggccggagagaacgcttac
gagctggacggcaagatccgcgccaacgttgtaggaaccaagacctacaccaacgacgcg
gtcggagtaaccgtgatgggtggattctacatgcccgtcaccggcgatacagtcatagga
ataatcaacgacgtgggtccctccaactggatgttggacatcaacgccccctaccccgca
cccctgcatgtcagcgaggtcccgtggaaggtggagttcggagacacctccagattcctc
accgtgggcgacgtcgtcctgctgaagatcctcatggtcgacgagagcaagaagattcag
gtcaccatgaaggattccggcctcaggaagatcgagggcggacagctggtggagatctcc
tattccaagatctccagggtcatcggcaagagcggatccatgatccagatgctgaagaac
atgaccgactgccgcattttcgtcggccagaacggaaggatctggatcgacggagacgga
gagaacgtggatgtcgccgcagaggcgatcagaattatcgagagagagtcccggtccgcc
aacctcacggacagggtcagggagttcatcgagaaaagactcccgcagtccgaagaggac
gaagaggaggattccgaatga
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