Methanogenic archaeon ISO4-H5: AR505_1485
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Entry
AR505_1485 CDS
T04272
Name
(GenBank) exosome complex exonuclease Rrp41
KO
K11600
exosome complex component RRP41
Organism
marc
Methanogenic archaeon ISO4-H5
Pathway
marc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
marc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AR505_1485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
marc03019
]
AR505_1485
Messenger RNA biogenesis [BR:
marc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
AR505_1485
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
AR505_1485
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DmsR_N
Motif
Other DBs
NCBI-ProteinID:
AMH95200
UniProt:
A0A110A3C4
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All DBs
Position
1576662..1577411
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AA seq
249 aa
AA seq
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MSGHTDMVLVNEDGIRIDGRRIDEKRPIKIEAGVLKNADGSCYLEIGKNKVLCAVYGPRE
CKPRHLQDPTKAVVQVKYNMEAYSVTDRKRPGTDRRSVEISKLIAEALENVVQTELYPRA
SIDVYIEILQANAGTRCAGLTAASVAIADAGIPMRDLVPAIACGKADGNVLLDLNKEEDN
YGQADVPLAIVPSTDEIVLLQMDGNMTRAELDHGLDMAFAAAHEVYELQRDALKRRYTEM
SKKEGDSDE
NT seq
750 nt
NT seq
+upstream
nt +downstream
nt
atgagcggacatacagacatggtattggtaaacgaggacggcatcaggatcgatggccgt
aggattgacgagaaaaggcccatcaagatcgaggcgggcgtcctgaagaacgcggacggt
tcctgctacctcgagatcggcaagaacaaggtcctgtgcgccgtatacggccccagggag
tgcaaacccaggcacctgcaggaccccaccaaggccgtcgtccaggtcaaatacaacatg
gaagcctactccgtcaccgacaggaagaggcccggaaccgacaggaggtccgtcgagatc
tccaagctcatcgccgaggccctcgagaatgtcgtccagaccgagctctacccccgcgca
tccatcgatgtgtacatcgagatcctccaggccaacgccggaaccaggtgcgccggactc
accgccgcatccgtggcaatcgccgatgcaggaatccccatgagggacctggtgcccgcc
atcgcctgcggaaaggccgacggcaacgtcctcctcgacctcaacaaggaagaggacaac
tacggacaggccgatgtgcccctcgccatcgtcccctccaccgacgagatcgtcctcctc
cagatggacggtaacatgaccagggccgaactcgaccacggactcgacatggccttcgcg
gccgcccacgaggtctacgagctccagagggacgcgctgaagaggcgctacaccgagatg
tccaagaaggagggtgattccgatgagtaa
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