Methanogenic archaeon ISO4-H5: AR505_1658
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Entry
AR505_1658 CDS
T04272
Name
(GenBank) exosome complex RNA-binding protein Csl4
KO
K07573
exosome complex component CSL4
Organism
marc
Methanogenic archaeon ISO4-H5
Pathway
marc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
marc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AR505_1658
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
marc03019
]
AR505_1658
Messenger RNA biogenesis [BR:
marc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
AR505_1658
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
AR505_1658
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Gene cluster
GFIT
Motif
Pfam:
ECR1_N
ECR1_N_2
S1
Zn_Tnp_IS91
DUF5029
OB_RRP5_4th
HypA
Zn_ribbon_FGT1_1
Motif
Other DBs
NCBI-ProteinID:
AMH95373
UniProt:
A0A0X8V2I9
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All DBs
Position
1779279..1779839
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AA seq
186 aa
AA seq
DB search
MTQKQVLPGDEIAVEEEYVAAEGTYVRDGKIYASQVGTLVLDDNECIAKVVSYNPPNILQ
IGDVVYLNIDDCRKTMATATAIATEGNDRPIGSSTVATIHVSKISPDYTDNVADEFRKGD
LVRGKVISVKPSLQLTTKEPHLGVVRAQCGICKTELVPKGKKNLFCPKCKRSQPRKLADD
YGDVVI
NT seq
561 nt
NT seq
+upstream
nt +downstream
nt
atgactcagaaacaggttcttcccggagacgagattgcggttgaggaggagtacgtggct
gcggaaggcacctacgtaagggacggtaagatctacgcctcccaggtcggcaccctcgta
ctcgacgacaacgaatgcatcgcgaaggtcgtctcctacaatccccccaacatccttcag
atcggagacgtcgtctacctcaacatcgatgactgcaggaagaccatggccactgccacc
gccatcgccaccgaaggcaacgacaggcccatcggcagcagcaccgtcgccaccatccat
gtctccaagatctccccagactacaccgacaacgtggccgacgagttcaggaagggagac
ctggtccgcggtaaggtcatcagtgtcaaaccctcgctccagctcaccaccaaggaacct
catctcggagtcgtccgcgcccaatgcggtatctgcaagaccgaactggtccccaaggga
aagaagaacctcttctgtcccaaatgcaagcgctcacagcccaggaaactggcggacgac
tacggagacgtcgtaatatga
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