Marinomonas arctica: IBG28_05830
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Entry
IBG28_05830 CDS
T06902
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mard
Marinomonas arctica
Pathway
mard03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mard00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IBG28_05830 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mard03019
]
IBG28_05830 (rnr)
03016 Transfer RNA biogenesis [BR:
mard03016
]
IBG28_05830 (rnr)
Enzymes [BR:
mard01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
IBG28_05830 (rnr)
Messenger RNA biogenesis [BR:
mard03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IBG28_05830 (rnr)
Transfer RNA biogenesis [BR:
mard03016
]
Prokaryotic type
tRNA degradation factors
IBG28_05830 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
HTH_12
S1_RRP5
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QNT07150
UniProt:
A0A7H1J9I4
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All DBs
Position
1264593..1267196
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AA seq
867 aa
AA seq
DB search
MSNNKINDPHMQREASKYDNPVPSREFILEFLATQNKSMGHLELCKEFSLTGEDEIEALR
RRLIAMCRDNQMTSNQNDEYSPILESDLIEGYVQGNKEGHGFLLRQSDDDIFLSARQMQN
VMDGDKVKVRLSGRSVKGRLDGVVVEVIERKHSQLVGRFYQETHRDGSSAAFVTPENPRI
AQDILITTDSGLSPKHGQYVLAEIVSYAERGKPAQGLVKKVLGDFMAPGVEIEVAMHRYE
IPHEWPAAVEKQIKNLSTEVAEEDKAHRIDLRDTPFVTIDGEDARDFDDAVYCEKTPGGW
KLFVAIADVSHYVKKDTALDEEAIVRGNSVYFPGRVIPMLPEVLSNGLCSLNPDVDRLVM
VAEISLTTKGKMRGYKFYEGVIRSHARLTYSKVAKMIAAEPEEQGIELRERYASIVSHID
DLNGLYQTLRSARDERGAMEFDTVETRMVFDENSKIEHIIPVERNDAHKLIEECMLCANV
ATAELLMKANLPALYRVHEGPKDDRLLTLRTYLGLLGLELTGGTKPTPADYAALSEAIKD
RADARSIQTMMLRSMSQAVYQPDNLGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRYLIRG
EGRPAVRQAHRVAGSLEIKARKIYGYTDADMDSLGESCSLTERRADEATRDVEAWLKCQY
VEQHLGEPFEGVVTAVTSFGLFVELQGLFVDGLVHISGLGQDYFVHDIEHQAIIGERTGR
VFRLGDTLKVRVASVNLEQRKIDLSLDENTTRQPRKKVERNEMSELEMQLAQLPPIELGG
RPKPKSVDKAQSAKSKEGKAAQEGKESDGKAKKKRRSPVSKGKRVRQKKSSTAAAASGKP
ASAVKKPKKPKKPKKPKKNNAKPRAKD
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaataataaaattaacgatccacatatgcagcgagaagcgtctaagtacgataac
cccgtaccaagccgcgaattcattttagaatttcttgccacccagaataaaagcatgggg
catttagagttatgcaaagagttttcgctgactggcgaagacgaaattgaagccctccgt
cgtcgtctcatcgccatgtgccgagacaatcaaatgaccagcaatcaaaatgacgaatac
tcgccgattttagaaagtgatctaattgagggttacgttcaaggtaataaagaaggccat
ggcttcttgttgcgtcagagtgatgacgatatttttctatcggcccgtcaaatgcaaaat
gtgatggacggcgataaagtaaaagtgcgactgtctggtcgcagcgttaaaggtcgctta
gatggtgtcgtggttgaagttatagaacgcaagcacagccagttagtagggcgtttttat
caagaaacccatcgcgacggcagcagtgcggctttcgttacgccagaaaatcctcgtatc
gcccaagatatcttgattactaccgattccggtttgtcgccgaaacacgggcaatatgtg
ttggctgaaatcgtctcctatgcggaacgtggtaagccagctcaaggtctagtaaaaaaa
gtgcttggcgactttatggcgccaggtgttgaaatcgaagtggctatgcaccgttatgag
atccctcatgaatggcccgctgcggttgaaaaacaaatcaagaatttaagcaccgaagtg
gcagaagaagataaagcgcatcgtattgatttgcgcgatacgccttttgtgacgatcgat
ggtgaagacgctcgtgactttgatgatgctgtgtattgtgaaaaaacaccgggtggttgg
aagctgttcgtggcgattgccgatgtgtctcattatgtgaagaaagacactgctttagat
gaagaagcgattgtgcgcggtaactctgtgtatttccctggtcgcgttattcctatgctg
ccagaggtattgtcgaatggtttgtgctctttaaaccctgatgtagatcgtttggtcatg
gtggcagagatttcgttaaccaccaaaggcaagatgcgcggctacaaattttatgaaggt
gtgattcgttcccatgcccgtttgacctattcaaaagtggcgaaaatgatcgctgctgag
ccagaagaacaaggcattgaattgcgtgagcgttacgcgtctattgtgtcgcatattgat
gatttaaatggtttgtaccaaacactgagaagtgctcgtgatgaacgcggtgcgatggag
tttgataccgttgaaacgcgcatggtgttcgatgaaaactcgaagattgagcacattatt
ccggtcgaacgtaatgatgcacacaaactgattgaagagtgtatgttgtgtgccaacgtg
gcgaccgctgagcttcttatgaaagccaatctgcctgccttgtatcgtgttcatgaaggg
ccaaaagacgatcgtttgttgacccttcgtacttatttgggtttgctgggattggagtta
accggtggcaccaagccgactccggccgattacgcagcgttatcggaagcgataaaagac
cgtgcagacgcccgcagtattcaaactatgatgctgcgttctatgtcacaggccgtgtat
cagccggataatttgggtcactttggtctgaattatgaagcttatacgcattttacatcg
cctattcgtcgttatcctgatttgttggtgcaccgtgcgattcggtatttgattcgtggc
gaaggtcgacccgcggtgcgtcaggcgcatcgtgtggcgggcagtttagaaattaaagcg
cgtaaaatttatggctataccgatgccgatatggacagcttaggtgaatcttgttctctg
accgagcgtcgtgccgatgaggctactcgtgacgtagaggcttggctgaaatgccaatac
gttgaacagcatttgggtgagccctttgagggggttgtcacggcggtaacgtcgtttggt
ttgtttgttgaactgcaaggtttgttcgttgatggtttggtgcatatatcagggcttgga
caagattattttgttcatgacatagagcatcaggcgattatcggtgaacgcactggtcga
gttttccgtcttggcgacaccttgaaagtacgtgtggcgagtgtcaatttagaacagcgt
aaaattgatttgagtttggatgaaaataccactcgtcaaccacgtaaaaaagtagaacgt
aatgaaatgtccgagctggaaatgcaactagctcagttaccgcctattgagctgggtggc
cgccctaagcctaagtctgtcgataaagctcaaagcgctaagtccaaagagggcaaagcg
gcacaagaaggcaaagaatcagacggaaaagcgaagaaaaagcgtcgttcaccagtttct
aaaggcaaacgtgttagacagaaaaaatcgtctactgctgcagctgcgagtggtaagcca
gcgtcagcggtgaaaaagccgaaaaaaccaaagaaaccaaagaagccgaaaaagaataac
gccaagccacgcgcgaaagattga
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