Marinomonas arctica: IBG28_06255
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Entry
IBG28_06255 CDS
T06902
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
mard
Marinomonas arctica
Pathway
mard03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mard00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
IBG28_06255 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mard03400
]
IBG28_06255 (recD)
Enzymes [BR:
mard01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
IBG28_06255 (recD)
DNA repair and recombination proteins [BR:
mard03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
IBG28_06255 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Viral_helicase1
SH3_13
Helicase_RecD
AAA_11
AAA_22
UvrD-helicase
UvrD_C
AAA_16
AAA_17
AAA_28
AAA
nSTAND3
SLFN-g3_helicase
CbiA
ADK
AAA_5
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
QNT07228
UniProt:
A0A7H1J9R2
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Position
1350490..1352424
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AA seq
644 aa
AA seq
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MDFSNQLGLLDSLDEKAREENPSATTPFSLSAWQSKGVLRAIDRQWIEQLAQHAKEGNSE
VNKSAVYIAGALCSAYLGAGHICIDLANIWQRPPEGIDLEELRAALEKSGVKSVSAWCQV
LQTSCLVSSADSVVERPMVLAGTRLYLYRYFQYEQQVLTYLKGQFTVAPFAVDAALLATL
FPNKADAVDWQKVAVANAASLPFSVISGGPGTGKTTTVTRLLALLVAQSLVEGKVLRIEL
AAPTGKAAARLTESISKAKAGLPLSDDVKLAIPEQASTLHRLLGSDFGRSRFKHNKANPL
HLDVLLVDEVSMVDLPMMAKLIDAMPPQARLILLGDKDQLASVEAGSVLGDLSYGIEEVY
FQPEWAERLSRLTGENLAPFGNASAPPISRALTLLRTSYRFDANSGIGYLAKAMNAGDSQ
AVLRCLQSNNTDVEWRTPEEGQTKADIATLAKGYDDYWEAVRQNLDIAKLYEVFSRYQIL
TAVRQGEFGVEKVNAQLEQYFYQRGRVKDPHVWYPGKAVMLTRNDAALGLFNGDIGLCMP
DEFQRLRVWFMQPDGSFTGLLPSRLSEFEVVFAMTVHKSQGSEFDHVALLLPMTPSPVLT
KELLYTGITRAKRSFALWGSSGLIRSATSARIERYSGLIDELWH
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggacttttctaatcaactaggtttgctcgactctcttgatgaaaaagcgcgtgaagaa
aatccatctgctacgacgccatttagtttgtctgcttggcaatctaaaggggttttacga
gccattgatcgtcagtggattgagcagctggcgcaacatgccaaagaaggcaattcagag
gtaaataagagcgctgtgtatatcgccggagccttatgcagcgcgtaccttggggctggc
catatttgtatcgatctagcgaatatttggcaaagaccaccagaaggcattgatttagaa
gaattaagagcggcattggaaaagagcggtgtgaagagcgtgtcggcttggtgccaagtc
ttgcagacaagttgtctggtttcgtcggcagacagtgtggttgaacgccctatggtgttg
gcgggcacgcgtttgtatttgtatcgttatttccaatatgagcaacaagtgctgacgtat
ctcaaggggcaatttactgtggcgccttttgctgtggatgcggcgttattggcaacgctg
tttcccaataaagccgacgcggtagattggcaaaaagtggccgtcgccaatgcggcaagt
ttgcctttttcggtgatcagtggcggcccgggaacgggaaagacaaccactgtgactcgt
cttttggcgttgctagtggctcagtcgctggtcgaaggtaaggtgttgcgtattgagtta
gccgcgccaactggcaaagccgcggcgcgtctaacggaatccatttcaaaagccaaagcg
ggtttgccattaagtgatgacgttaagcttgccattccagagcaagcgagtactttgcat
cgcttgttaggaagtgattttggccgcagtcgttttaagcacaataaagcaaaccccttg
catttggatgtgttgctggtggacgaagtgtccatggtggatttgccaatgatggcgaaa
ttgattgatgctatgccgcctcaggcgcgactgattttgctgggcgacaaagatcagctg
gcttcggtagaagcgggcagtgtactgggggatttatcctatggcatcgaagaggtttac
ttccaaccagaatgggctgagcgactgagccgtcttactggagaaaaccttgcgccgttt
ggcaatgcgtcagcgccgcccataagccgagccttgaccttgctaagaaccagctatcgc
tttgatgccaatagtggcattggatacttggcaaaagccatgaacgctggggacagccaa
gcggtattgcgttgcttgcagtctaataacacggatgttgaatggcgaacgccagaagaa
ggacagaccaaggccgatattgcgactctcgccaaagggtatgatgattattgggaagcg
gtgcgtcagaaccttgatattgccaaactttatgaggtgttttcacgttaccagattctg
acggcggttcgccaaggggagtttggtgtcgagaaggtgaatgctcagttggagcagtat
ttctatcagcggggacgagtaaaagacccccatgtttggtatccggggaaagctgtgatg
ctaacccgaaatgatgcggcattgggcttgtttaatggcgatattggtctttgtatgcct
gatgagtttcagcgtcttcgagtatggtttatgcagcctgatggttcttttactggcttg
ctgccgagtcgtttgagtgagtttgaagtggtctttgccatgacagtgcataaatctcaa
gggtcagagtttgatcatgtggctttgttattgcctatgacgccttcgccagtattaacc
aaagagttgctttataccggtattactcgggcgaagagatcctttgcgttatggggatcg
agcggcttaattcgtagtgcaacgagtgctcgtattgaacgttattcaggccttattgat
gagctttggcattga
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