Marinomonas arctica: IBG28_08885
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Entry
IBG28_08885 CDS
T06902
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mard
Marinomonas arctica
Pathway
mard03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mard00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IBG28_08885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mard03019
]
IBG28_08885
03009 Ribosome biogenesis [BR:
mard03009
]
IBG28_08885
Enzymes [BR:
mard01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IBG28_08885
Messenger RNA biogenesis [BR:
mard03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IBG28_08885
Ribosome biogenesis [BR:
mard03009
]
Prokaryotic type
rRNA helicases
IBG28_08885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QNT07696
UniProt:
A0A7H1JB30
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All DBs
Position
1944547..1946475
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AA seq
642 aa
AA seq
DB search
MSDADTQPTFDSLGLIAPVLKAVADLGYEQPSAIQAQSIPYLLEGRDLLGQAQTGTGKTA
AFALPLLSRIDVTDKTTQLLVLAPTRELAIQVAEAFQSYARNLPDFHVLPIYGGMSYDTQ
LRQLKRGVQVVVGTPGRVMDHIRRKTLKLDGLKALVLDEADEMLRMGFIDDVEWILEQTP
PTRQIALFSATMPPVIRQVANRHLNNPKEVKIVTKTSTAMTITQKYWSVSGLHKLDALTR
ILEMNEHDGMIIFVRTKAATIELAEKLTARGHACEALNGDISQNLRERTVDRIKNGQIDI
LVATDVVARGLDVERVSHVVNYDIPYDTESYVHRIGRTGRAGRLGTAILFVAHRERRMLQ
AIERATRQPIESMTLPTASDINAHRVNRFKQRITDAMDNENLDFFLELVESYQKENEVDP
LKMAAALAHMAQGKTPLLLSEMEVRQERRERREDRDGSRSDRGDRGDRGDRSDRGDRGDR
TPRERKVRPVTAEAMPLKDDPNTSMTRYVVQVGYSDGVKPGNIVGAIANEADIESRYIGH
IEIYEDFATVDLPSNLSADALGKLGKTRICGQRTDIAKLDNADELNKRAAAPSTRKRPAG
GGERRPSNGGERRRPSAGAGGGRDRDANRSAERRPRAPRKNA
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgctgatactcagcctacatttgattcgttgggcctaatcgcccctgttctt
aaagcggttgctgacctaggttacgagcaaccatctgctatccaagcgcaaagtattcca
tatctattagaaggtcgagaccttttggggcaagcgcagacgggtaccggtaagacagca
gcgttcgcgctcccgttactgtctcgcattgacgttacagataaaacgacacaattactt
gtactggctccaacccgtgaacttgctattcaggttgctgaagcatttcaaagttacgct
cgtaaccttccagattttcatgttttgccaatttacggcggcatgtcatacgacactcaa
cttcgccaactaaaacgtggtgttcaagttgttgttggtacgcctggtcgtgttatggat
catattcgtcgtaaaacattgaagctagacggtcttaaagccctagttcttgatgaagcg
gatgaaatgttacgcatgggattcatcgatgatgtcgagtggattctagagcaaacaccg
cccacacgccaaatcgcattgttctctgcgactatgcctcctgtgattcgtcaggttgct
aatcgtcaccttaataatccgaaagaagtgaaaattgttaccaaaacttctacggcaatg
acgattactcaaaaatattggtcagtgagtggtctgcataaattagacgcgttgactcgt
attcttgagatgaacgaacatgacggtatgattatctttgttcgtaccaaagcggcaacg
attgagcttgctgagaaactcactgcccgtggtcacgcttgtgaagcgttaaatggtgac
attagtcaaaacttgcgtgagcgtacggttgatcgcattaagaatggtcaaattgacatt
ctggttgccacagacgttgttgctcgtggtctagacgtagagcgcgtaagtcacgtggtc
aactatgacattccgtatgatactgaatcttatgttcaccgtatcgggcgtaccggtcgt
gctggtcgtctaggaacagcaattttgttcgttgctcatcgcgagcgtcgtatgttgcaa
gctattgagcgtgcgactcgtcagccaattgaaagtatgactttgccgactgcttccgat
attaacgcacatcgcgttaatcgttttaagcagcgcatcaccgatgcgatggacaatgaa
aaccttgatttcttcttggagcttgttgaaagctaccagaaagaaaatgaagtggatcct
ttgaaaatggcggctgctttagcgcatatggcacaaggcaaaacgcctttgctattgtct
gaaatggaagttcgccaagaacgcagagagcgtcgtgaagatcgcgatggatctcgttct
gaccgcggcgatcgtggtgatagaggcgatcgtagtgatagaggcgatcgtggtgatcgt
acgccgcgtgaacgtaaggttcgtcctgttactgcagaagcaatgccgttaaaagatgat
ccaaatacatccatgactcgttatgttgttcaagttggctacagcgatggtgttaaacct
ggcaacattgttggtgcgattgcgaatgaagcggatattgaaagccgttatattggtcat
attgaaatatatgaagattttgcaactgtcgatttgccttctaacctaagtgccgatgca
ttgggtaagttaggtaagactcgcatctgtggacaacgcactgatattgctaagctagat
aatgctgatgagttgaataagcgtgcagccgcgccttctactcgtaagcgcccagctggt
ggcggtgaacgtcgtccatctaatggtggtgaacgtcgtcgtccaagcgctggtgcgggt
ggcggtcgtgaccgcgatgcaaaccgcagtgctgagcgtcgtccaagagcgccacgtaaa
aacgcttag
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