Marinomonas arctica: IBG28_15875
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Entry
IBG28_15875 CDS
T06902
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
mard
Marinomonas arctica
Pathway
mard02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mard00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IBG28_15875 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mard03021
]
IBG28_15875 (rpoD)
Transcription machinery [BR:
mard03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IBG28_15875 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
QNT05155
UniProt:
A0A7H1J3T9
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All DBs
Position
3421145..3422983
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AA seq
612 aa
AA seq
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MPDTQQSRLKELITKGKEQGYLTFAEVNDHLPDDLSDPEQVEEIIAMINDMGITVSEVAP
DKDSLLMEEGDATDEAAAEEAAAALAAVEGDITRTTDPVRMYMREMGTVELLTRAGEIAI
AKRIEEGTREVMAAISYFPGAVDVLLDAYSKVQEEEGRLSDIFSGFIDGDGEEPIFEDTV
NDEPLIDEDTVDSDEDDDDSETTEEETDNGPDPEETALRFNDITRIYNELKVLLETRDRQ
DPDVKNKQEELSISFAPIKLVPKMFDELIDRVRTRMEKIRDQERLIMQVCVRKSGMPRTE
FLKRFPSNETNPDWLKEQIASGADYAAALEENEAEFMRSQRKLRAVSKETGLTIAELKEI
NRRISIGETRARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREATPE
ELAARMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDDGAESPIDIATIEGLR
ESTTMVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSEHLRSFLDD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgccagacactcaacagtcacgtctcaaagagctgatcaccaagggtaaagaacaaggt
tacttaacttttgctgaagttaacgaccacctccctgatgacctttcagacccggagcaa
gtagaagaaatcattgccatgatcaacgacatgggcattacggtttccgaagttgcaccc
gataaagatagccttctcatggaagaaggtgatgcgaccgatgaagccgccgcggaagaa
gccgctgccgctttggccgcagtagaaggtgatattactagaaccactgacccagtccgt
atgtacatgcgtgaaatgggtacggtcgaactattgactcgtgccggcgagattgccatc
gcaaaacgtatcgaagaaggtactcgtgaagtcatggctgctatctcctacttccctggt
gcggtagatgtattgctcgacgcctactcaaaagtacaggaagaagaaggccgcctaagc
gatatctttagtggctttatcgatggcgacggtgaagaacctattttcgaagacaccgtt
aacgatgagccattaatcgatgaagatacggtcgatagtgacgaagacgatgatgattca
gagaccaccgaagaagaaacggataacggtcctgaccctgaagaaacggcattacgcttc
aacgatatcacgcgcatttacaatgaattaaaagtgctattggaaacacgcgacagacaa
gaccctgacgtgaaaaataagcaagaagagctaagcattagttttgctcctattaagctt
gttccaaaaatgtttgatgagctgatcgatcgcgtacgtacacgtatggaaaaaatccgc
gaccaagaacgccttatcatgcaagtgtgtgtgcgcaaatctggcatgccaagaaccgaa
tttttaaaacgttttccaagcaatgaaaccaatcctgattggctgaaagaacaaattgct
tctggtgccgattacgccgccgcactggaagaaaacgaagctgagtttatgcgcagtcag
cgtaaactacgcgctgtttctaaagaaacaggtttaaccattgcagaactaaaagaaatt
aatcgtcgcatttcaatcggtgaaactcgtgctcgccgtgcgaaaaaagaaatggttgag
gccaacttacgcttggttatttctattgcgaaaaaatacactaaccgtggcttacaattc
ttggatcttattcaagaaggcaacatcggtctaatgaaagcagtggataaatttgaatac
cgccgtggttataagttctcaacttatgccacttggtggattcgtcaagcaatcactcgc
tccattgccgaccaagctcgcactatccgtattcctgtacatatgattgaaacgattaat
aaactaaatcgtatttctcgtcagatgctacaagaaatgggacgtgaagcaacgcctgaa
gaattggctgctcgcatggacatgcctgaagacaaaattcgcaaagtattgaagatcgct
aaagagccgatttcgatggaaaccccgatcggtgatgatgaagactctcacttaggtgac
ttcattgaagacgatggtgcggaatcccctattgatatcgcaacaatagaaggtttgcgc
gaatcaaccactatggtacttgctggtttaacggcacgtgaggccaaagtgttgcgcatg
cgcttcggtatcgacatgaacactgatcacactcttgaagaggtcggtaagcagtttgac
gtgacgcgtgaacgtatccgtcaaatcgaagccaaggcactgcgtaagctacgtcatcct
agccgctcagagcatctaagaagcttcttagacgattga
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