Marinomonas arctica: IBG28_20045
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Entry
IBG28_20045 CDS
T06902
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mard
Marinomonas arctica
Pathway
mard03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mard00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IBG28_20045 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mard03021
]
IBG28_20045 (rpoC)
03400 DNA repair and recombination proteins [BR:
mard03400
]
IBG28_20045 (rpoC)
Enzymes [BR:
mard01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IBG28_20045 (rpoC)
Transcription machinery [BR:
mard03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IBG28_20045 (rpoC)
DNA repair and recombination proteins [BR:
mard03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IBG28_20045 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QNT05900
UniProt:
A0A7H1J5Y4
LinkDB
All DBs
Position
complement(4317344..4321546)
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLGLLKSQGQSDEFDAIRIGLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVALSKVRRERMGHIELASPVAHIWFLKSL
PSRIGLILDMTLRDIERVLYFESFIVIDPGMTTLDKGQLLNDEQYFEALEEFGDEFDARM
GAEAVQMLLRDLDMPVEINSMREELNSTNSETRIKKLSKRLKLVEAFYHSGNNPEWMVLD
VLPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLELSAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPS
LRLHQCGLPKKMALELFKPFIFSKLELRGMATTIKAAKKMVERETPEVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPMLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREKINAKGEGMAFSDIKEVHRAYGAK
QVELHAKVKVRISQVDTTLDGEKVPSTFIADTTVGRALLFDIVPDGLPFSVVNQTMKKKA
ISNLINECYRKVGLKESCIFADQLMYTGFAYATASGSSVGVDDFVIPPEKAAIIAKAEAE
VKEIEYQYADGLVTQGEKYNKVIDLWSRTNETVTEAMMKNLAKEMTVNKAGETVEQQSFN
SVYMMADSGARGSVAQMRQLGGMRGLMAKPDGSIIETPITANFREGLSVLQYFTSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITEVDCGSTNGISVAAMIEGGDVVVPLGHRVL
GRVVAQDVIDGKGDFVLAAGTLIDEHDVRTIEAAGVDEMIIRSVITCNTRHGVCAKCYGR
DLARGHQVNIGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAVDSVQVKSAGTVRFN
KMKSIERHTGHLVVASRSSELAIADEAGREKERYKLPYGAVLSVREGDQVTAGQIVANWD
PHTHPIVSEMEGRLEFSGMEENVTIRRQSDEMTGLTTIEVMEMRDRPAAGKDIRPMIAVV
DAEGNPVLIPGTESPVQYMLPEKALLSLDHGATVKSGEVLARIPQESIGNKDITGGLPRV
ADLFEARRPKDPAVMAETSGVVSFGKETKGKIRLVITPQNGDEPVETLIPKWRQINIFDG
EEVAKGEIIADGPLSPHDILRLQGVEALADYITNEVQEVYRLQGVVINDKHIEVIVNQML
RKVEVGESGDTDLIQGDQVEFTHLLDANEKAIAEGKFPAKYERVLLGITKASLATESFIS
AASFQETTRVLTEGAVTGKKDHLRGLKENVVVGRLIPAGTGLAYHNERKRKKELAQAAKE
GSSTVSASDVEEALSAALKD
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacttattaggtcttctaaaatcacagggacaatctgacgagtttgatgcgatc
cgcattggcttggcatcaccagatatgattcgttcatggtcttacggtgaagttaaaaag
ccagagaccatcaactaccgtacgttcaaaccagaacgtgacgggttgttctgtgcaaaa
atctttggtcctatcaaggactatgagtgcttgtgtggtaaatacaagcgtttgaaacac
cgtggtgttatctgtgagaagtgtggcgttgaagtggctctgtctaaagtgcgtcgtgaa
cgcatgggtcacattgagcttgcatcgcctgttgcacacatttggtttttgaaatcttta
ccgtctcgtattggtcttatccttgatatgacactgcgtgacattgagcgtgttttgtat
tttgaatctttcatcgtgatcgatccaggtatgacgacgcttgataaaggccaattgcta
aacgacgagcagtactttgaagcgctagaagagttcggtgacgaattcgatgcccgtatg
ggtgcggaagcggttcagatgttgcttcgcgatctagacatgcctgtagaaatcaacagc
atgcgtgaagagctaaacagcacgaattcagaaactcgcattaagaagctttctaagcgt
cttaagctggttgaagcattttatcattctggtaacaacccagagtggatggtgcttgac
gtattgcctgttcttccgccagatcttcgtccattggtaccacttgaaggtggccgtttt
gcgacgtctgatttgaacgatctttaccgtcgtgtgattaaccgtaacaaccgtctaaag
cgcctgttagagctttctgctccagatatcatcgtacgcaatgaaaagcgtatgttgcaa
gaatctgttgatgcattgcttgataacggtcgtcgtggtcgcgccattactggttctaac
aagcgtcctctaaaatctttggctgatatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgctaggtaagcgtgttgactattctggtcgttctgtaatcactgtaggtccatca
ctgcgtctacatcagtgtggtctacctaagaaaatggcacttgagctattcaagccattc
attttctctaaacttgaacttcgtggcatggcgacgacgatcaaagcagcgaagaaaatg
gttgagcgtgaaacgccggaagtgtgggatatccttgatgaggttatccgcgaacatcca
gtgatgttgaaccgtgcaccaacacttcaccgtttgggtatccaagcgtttgaaccaatg
ttgatcgaaggtaaggctattcagttgcacccactagtgtgtgcggcatacaacgctgac
ttcgatggtgaccaaatggcggttcacgttccgttgacgattgaagcacagcttgaagct
cgtgccttgatgatgtctacgaacaacatcttatcgcctgccaacggcgagccgatcatc
gtgccttctcaggacgttgtattgggtctgtactacatgacacgtgagaaaatcaatgcc
aaaggcgaaggcatggcattttctgacatcaaagaagtacaccgtgcgtatggtgcgaaa
caagttgaattgcatgccaaggtaaaagtacgtatcagccaagtggatactactcttgat
ggcgaaaaagtgccgtctacttttattgccgatacaacggttggtcgtgctttgctgttt
gatattgttcctgatggcctaccgttctccgtggttaaccaaaccatgaagaagaaggca
atctctaacttgatcaacgagtgttaccgtaaagtgggcttgaaagaaagctgtatcttt
gctgaccaattgatgtacacaggttttgcttacgcaacggcgtcaggttcttctgtaggt
gttgatgactttgttatcccgccagaaaaagccgcgattattgccaaagcggaagcggaa
gttaaagaaattgaataccaatacgcggatggtcttgtaacgcaaggcgagaagtacaac
aaggtaatcgatttatggtctcgtactaacgaaaccgtaacagaagccatgatgaaaaac
ttggcgaaagagatgactgtcaacaaagcaggtgaaacggttgaacaacaatccttcaac
tctgtatacatgatggctgactctggtgcccgtggtagtgttgctcagatgcgtcagttg
ggcggtatgcgtggtttgatggcgaaaccagatggttccatcatcgagacgccaatcact
gcaaacttccgtgaaggtctatctgtacttcagtactttacctccactcacggtgctcgt
aagggtcttgctgatacggcgttgaaaacagcgaactccggttacttgacgcgtcgtctc
gtagacgtagcgcaggatttggttatcactgaagtagattgtggctctacaaacggtatt
tccgttgcggccatgattgaaggcggtgacgttgttgttccgctcggtcatcgcgtattg
ggtcgtgttgtggctcaagacgttattgacggtaaaggcgacttcgtcctcgctgctggt
actttgattgatgagcatgatgttcgtactatcgaagcggctggtgtcgacgaaatgatc
attcgttctgttatcacttgtaatacgcgtcatggtgtatgtgccaagtgttacggtcgt
gacttggctcgtggtcatcaggttaacattggtgaggcgattggtgttgttgcagcacag
tctatcggtgagccaggtacacagttaacaatgcgtaccttccacatcggtggtgccgct
tctcgagcgtctgccgttgatagtgttcaagtgaagagtgcaggtacggttcgttttaac
aagatgaagagtatcgagcgccacacagggcatctagtggttgcctctcgttcttctgag
ttggctattgctgacgaagcgggtcgtgagaaagaacgttataaacttccttatggtgcg
gtattgagtgtacgtgaaggcgatcaagtaacggcgggtcaaatcgtcgctaactgggat
ccacatacacacccaatcgtatctgagatggaaggtcgtcttgagttcagtggtatggaa
gagaacgtgactattcgtcgtcaatctgacgaaatgacgggcttgactacgattgaagtt
atggagatgcgtgaccgtcctgctgctggtaaagacatacgtccgatgattgccgttgtt
gatgcagagggtaaccctgtattaattcctggtactgaatctccagtacagtacatgctt
cctgaaaaagcattgttaagcctagatcatggtgcgacagtgaaatccggtgaggttctt
gcgcgtattcctcaagaatctattggtaacaaggatattaccggtggtttgccacgtgtg
gccgacctatttgaagcgcgtcgtccgaaagatcctgctgttatggcagagacaagcggt
gtggttagcttcggcaaagagacaaaaggtaagattcgtttggtgatcacaccacaaaat
ggtgatgagccagttgagacattgattcctaaatggcgtcaaatcaacatctttgacggc
gaagaagtggcaaaaggtgaaattatcgccgatggtccattgagccctcatgacattttg
cgtcttcaaggtgtagaggctttggctgattacatcacgaatgaagtgcaagaagtttac
cgcttacaaggcgtagtaattaacgataagcatatcgaagttattgttaaccaaatgttg
cgtaaagtggaagttggagagtctggtgatacggatcttatccaaggtgatcaggttgag
tttactcacctgctagatgcaaacgaaaaagcaatcgctgagggtaaattcccagcgaag
tatgagcgcgtgcttctaggtatcacgaaagcttctttggctactgagtcctttatatca
gcagcatctttccaagagacaactcgtgttcttacggaaggtgcggtaactggtaagaaa
gatcacttacgtggcttgaaagaaaacgttgttgtaggtcgtttgataccagcaggtaca
ggcttggcttaccacaatgagcgcaagagaaagaaagagcttgcgcaagcagcaaaagaa
ggaagttcaacagtgagtgcatccgatgtggaagaagcattgagtgccgcactgaaagac
tag
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integrated database retrieval system
