Maribacter sp. MJ134: EJ994_07705
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Entry
EJ994_07705 CDS
T05877
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mare
Maribacter sp. MJ134
Pathway
mare03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mare00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EJ994_07705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mare03019
]
EJ994_07705
Enzymes [BR:
mare01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EJ994_07705
Messenger RNA biogenesis [BR:
mare03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EJ994_07705
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
SNF2-rel_dom
UTP25_NTPase-like
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
AZQ58693
LinkDB
All DBs
Position
complement(1772744..1774096)
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AA seq
450 aa
AA seq
DB search
MASFSEFKINNPLRNALDDLGFQEATPIQEQAFSVVMSGKDVVGIAQTGTGKTFAYLLPL
LNMLSFSKEIHPRVLILVPTRELVVQVVEEVEKLAKYASVRVTGVYGGTSMNRQKETLAL
GTDIVVATPARLYDLMLTRALQLKNVKKLVIDEVDVMLDLGFRFQLVNIFELLPKRRQNI
MFSATMTDDVEKLINDFFEGVQQIAVAVSGTPLDNIAQTCYAVPNFYTKVNLLVHLLQDV
DTFHKVLVFVSSKRSADLLFKELAEFFSEETCVIHSNKTQNYRLRSINQFDSGQNRILVT
TDVMARGLDLDQISHVINFDTPVYPENYMHRIGRTGRAEKEGSSILLFTAKEEPAKEAIE
ELMNRKIDVLQLPGEVEIATQLTRDERPKHIERENPLKENEEERGASFHEKSEKNRKQNQ
GGAYKRIIKKKYTKPKTRGDKNFGKKRKRK
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggcctctttttccgaatttaaaattaacaatcccctgcgaaacgctttagatgacttg
gggtttcaagaggctacacccatacaagaacaggctttttctgtggtgatgagtggtaag
gatgttgttggaatagcgcaaacgggaacaggcaaaacctttgcgtatcttttgccgcta
ttgaatatgctctctttttccaaagagatacatccgcgagtgctgatattggttcctaca
cgcgaactagtggtgcaggtagttgaagaggtagaaaaattggctaagtatgcttccgtc
agagtcactggcgtatatggaggcactagcatgaataggcagaaagaaactttggcacta
ggcacggatatcgtagtagctactccggcgcggttgtacgacctgatgcttacgcgagcg
ttacaactaaagaatgtaaaaaaactggtcattgacgaggtagacgttatgctggattta
ggttttcgttttcaactggtgaatatctttgaactcttaccaaaacgtagacagaatatt
atgttttccgctaccatgacagacgatgtagaaaagttgatcaatgatttttttgaaggg
gtacagcaaattgccgtagcggttagtggaacgcctttggacaatattgcacagacctgt
tatgccgttcccaatttttataccaaggtaaatctattggtgcacctacttcaagatgtg
gatacttttcataaagtacttgtttttgtttccagtaaacgaagcgcggatttattgttc
aaggaattggccgaatttttcagcgaggaaacttgtgttatccactctaataagacccaa
aactatagactgcgctctataaaccagttcgattctggtcaaaatcgaattctcgttacc
accgatgtaatggcacgtggactggatttggaccaaatttcacatgttattaattttgat
acaccggtttatccagaaaactatatgcaccgtataggacgaacgggtagggcagagaag
gaaggcagttctattctcctatttacagcaaaggaggaacctgcaaaagaggctatagag
gaattaatgaatagaaaaatcgatgtgcttcaactacctggagaagttgaaattgctacc
caattaacacgggacgaaaggcccaagcatatagagcgcgaaaatccgcttaaagaaaac
gaagaggaaaggggtgctagctttcatgaaaaatcggagaaaaacagaaagcaaaaccaa
ggtggcgcctacaagagaattatcaaaaagaaatataccaaaccaaaaacgcgtggggat
aaaaattttggtaagaagcgcaaaagaaaataa
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