Mariniflexile sp. TRM1-10: CJ739_139
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Entry
CJ739_139 CDS
T05592
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
marf
Mariniflexile sp. TRM1-10
Pathway
marf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
marf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJ739_139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
marf03019
]
CJ739_139
03400 DNA repair and recombination proteins [BR:
marf03400
]
CJ739_139
Enzymes [BR:
marf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CJ739_139
Messenger RNA biogenesis [BR:
marf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CJ739_139
DNA repair and recombination proteins [BR:
marf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CJ739_139
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Peptidase_C36
DUF6157
Motif
Other DBs
NCBI-ProteinID:
AXP79239
UniProt:
A0A385BJH9
LinkDB
All DBs
Position
complement(120526..122730)
Genome browser
AA seq
734 aa
AA seq
DB search
MLIAKSDLHSALKKYFGFGKFKGLQEGVVESILSGNNTFVIMPTGGGKSLCYQLPALMQE
GTAIVVSPLIALMKNQVDAIRGVSNEEGIAHVLNSSLNKTEIKRVKEDIVNGITKLLYVA
PESLTKEENVEFLRSVKVSFMAIDEAHCISEWGHDFRPEYRNLKHIIGRIGDNIPIIGLT
ATATPKVQEDIIKNLGISGAKTFKASFNRPNLYYEVRPKTKNVDADIIRFIKQNQGKSGI
VYCLSRKRVEELAQVLQVNGIKAVPYHAGLDAKSRSNYQDNFLMEDVDVVVATIAFGMGI
DKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAYYAYKDIEKLEKFMSGKPVAEQ
EIGQALLQEVVAFAETSISRRKFILHYFGEEFDNETGEGGDMDDNVRHPKKKHEAKDDVK
LLLETIDKTNEKYKSKDLVHVITGKENALINSHKTNEQAFFGKGKDKDKKYWMALLRQVL
VSGLLKKDIETYGVIKLAKAGRDFIKKPESFMMTEDHIFDGEQEDGTIVTAAKGEGAVAD
ELLMNLLKDLRKKNAKKLGVPPFVIFQDPSLEDMALKYPITMAELANVHGVGDGKAKKYG
KDFIELIAQYVEEHDIIRPDDLVVKSTGSNSANKLYIIQNIDRKLPLDDIASSKGMSMED
FIKEMEAIVYSGTKLNINYWIDEILDEDQQDEIHDYFMESKTDSIDVAIKEFDGDYDEDE
LRLYRIKFISEVAN
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgttaatagcaaaaagtgacttgcattcagcactaaaaaagtattttgggtttggcaaa
ttcaaaggactccaagaaggtgttgtagaaagtattttatcaggaaataacacattcgtt
atcatgccaacgggcggtggtaaatcgctttgttatcaactgccagcattaatgcaagaa
ggaacggccattgtagtgtctcctttaatagctttaatgaaaaatcaagtagatgccatt
agaggtgtttccaatgaagaagggattgcacatgttttaaattcctcgctaaataaaaca
gaaataaaacgagttaaggaagatattgttaatggtattacgaaacttctttatgtggca
ccggaatcgctcactaaggaagagaatgtagagtttttacgttcggtgaaagtgtctttt
atggctattgacgaagcacattgtattagtgaatggggacatgattttagaccggaatac
agaaatttaaaacatattattggtcgtattggcgataacattcccattataggtttaact
gctacggcaacgcctaaagtgcaggaagatattattaaaaacttaggaattagtggggct
aaaacatttaaagcctcgtttaatagacctaatttatattatgaagtacgtcctaaaacc
aagaatgtagatgccgacatcatccgttttataaagcaaaaccaaggaaagtccggtatt
gtttactgtttaagcagaaaacgagttgaagaacttgcacaggttttgcaggttaatggt
attaaagcagtcccttatcatgcgggattagatgctaagtcaagatcaaactaccaagac
aactttttaatggaagatgttgatgtggtggtagctacaatagcctttggtatgggcatc
gacaaacctgatgtgcgttttgtaattcatcacgatattccgaaaagtatagaaagctat
taccaagaaaccggtagggcagggcgcgatggtggtgaaggacattgtttggcatattat
gcctataaagacatcgagaaacttgaaaaattcatgtctggtaaacccgttgcagaacag
gaaatcgggcaggccttattgcaggaagtggtagcattcgccgaaacatctatttcccgt
agaaagtttattttacattattttggtgaagagtttgataacgaaacaggtgaaggtggc
gatatggatgataacgttagacaccccaaaaagaaacacgaagcgaaagatgatgttaag
ttacttcttgaaactattgataaaactaacgaaaagtacaagtctaaagacctagtacat
gttattacgggtaaagaaaatgccttaattaattcgcataaaaccaacgagcaagctttc
tttgggaaagggaaagataaagataaaaagtattggatggccttattaaggcaagtactg
gtgtctgggttgcttaaaaaagatattgaaacgtatggtgtgatcaaattagctaaagct
ggtagagattttataaaaaaaccagaatcttttatgatgaccgaagaccacatttttgat
ggagagcaagaagacggtactattgttacagcagctaaaggagaaggcgctgtagccgat
gagttgttaatgaatttattgaaagatttacgtaaaaagaatgctaaaaaattaggagtg
cctccttttgttatttttcaagacccatcgctagaagatatggcgttaaaatatcccatt
actatggcagaacttgctaacgtgcatggtgttggtgatggaaaagcaaaaaaatatggt
aaagattttatagaacttatagcacaatatgttgaagaacacgatattattcgtccagat
gatttagttgttaaatctacgggaagtaattcagccaataaactttatattattcaaaac
atagatagaaagttgccattagatgatattgcttcatcaaaaggcatgtctatggaagat
tttatcaaggaaatggaagccatagtctattctggtaccaaactaaatataaactattgg
attgatgagattttagatgaagaccaacaagatgaaattcatgattactttatggaatct
aaaacggatagcatagatgtcgctattaaggaatttgatggtgattatgatgaagatgaa
cttcgtttgtatagaattaagtttattagtgaagtagctaattga
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