Mariniflexile sp. TRM1-10: CJ739_1535
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Entry
CJ739_1535 CDS
T05592
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
marf
Mariniflexile sp. TRM1-10
Pathway
marf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
marf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJ739_1535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
marf03019
]
CJ739_1535
03016 Transfer RNA biogenesis [BR:
marf03016
]
CJ739_1535
Enzymes [BR:
marf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CJ739_1535
Messenger RNA biogenesis [BR:
marf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CJ739_1535
Transfer RNA biogenesis [BR:
marf03016
]
Prokaryotic type
tRNA degradation factors
CJ739_1535
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
CSD
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
AXP80623
UniProt:
A0A385BNE8
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All DBs
Position
complement(1739247..1741481)
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AA seq
744 aa
AA seq
DB search
MTRNKKGKSKKGISNLTNTILSIIKKDRNQSFNYKQIAAKLGVSDASSRNQIIKKLAELA
VKKEIEEVERGKFKAVMNTEYHTGILDLSGKGIGYVISEDFDDDVFIASNNINKALNGDE
VEFYVYKRRHRGKLEGEITQVLKREKNEYVGVIQIQENKNFAFVIADSNKMYKDIFVPIN
KTLKAEDGDKVLVKLEDWPENADSPYGKVIQILGKPGEHNTEIHSILAEYGLPHEFPYEV
EEFANKLNTSITTEEISKRRDMRQDLTFTIDPKDAKDFDDALSFKVLDNGLYEIGIHIAD
VSHYVQEGTVLDDEAYERATSIYLVDRVVPMLPEVLSNNACSLRPHEEKLTFSAVFHMNE
KCEIKNEWFGRTVTYSDARFAYEEAQAIIEQNVTLSAVEVFQLDKINTSISKEVSLTGEA
YNTLPEIAQAILKMDELAKKMRAKRMISGAISFDKVEVKFNLDENANPVGVFFKTSKDAN
KLIEEFMLLANRKVSEFIGKKDPKKTFVYRIHDEPDDSKLANLQGIVSKFGYKLNFKDRK
TTSASLNYLLKEVSGKKEQNLVDTLTIRSMSKAEYSTQNIGHYGLAFDYYSHFTSPIRRY
PDVMAHRLLQHYLDGGKSANETVYEEKCNHSSNMENLATKAERDSIKYMQIKFMQDHKDE
NFVGVISGVTDWGIYVEIIVNKCEGMVSVRDMNDDHYAFDQEQYAMVGRNRKIMYQLGDE
VIVKVKNADLVKKHLDFNLIGKNE
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgacaagaaataaaaaagggaaatccaaaaaaggcatttccaaccttacaaatactatt
ttaagtattattaaaaaagatagaaaccagagttttaactataaacaaattgctgctaaa
ttaggcgtaagtgatgccagcagtagaaatcaaattataaagaagttagctgaacttgct
gtaaaaaaagaaattgaagaagtagaacgtggcaagtttaaagctgtcatgaatactgaa
taccacacaggaattttagatttatctggaaaaggtatcggttatgttattagtgaagat
tttgatgatgatgtatttatagcttcaaataatattaacaaagccttaaacggtgatgaa
gtagaattttatgtttataaacgacgtcaccgtggtaaattagaaggtgaaattactcaa
gttttaaagcgtgaaaaaaacgaatatgttggagttattcaaattcaagaaaataagaat
tttgcttttgtaatagccgatagtaataaaatgtacaaagatatttttgtaccaataaat
aagactttaaaagctgaagatggtgataaagttttggtaaaacttgaggattggccagag
aatgccgattccccttatgggaaagtcattcaaatcttaggaaaacctggagagcataac
acagaaatacattctattttagctgaatatggattgcctcacgaatttccttatgaagtt
gaagaatttgctaataaattaaatacctctattactactgaagaaatttcaaaacgtcgt
gatatgcgacaggatttgacttttactatcgatccaaaagatgctaaagattttgatgat
gctttatcttttaaagttttagataatggtttatatgaaataggcattcatattgccgat
gtatcacattacgttcaagaaggaacggttttagatgatgaagcttatgaacgtgctact
tctatttatttagtagatcgtgtcgttcctatgcttcctgaagtgttatcaaataatgcc
tgttctttacgtccacatgaagaaaaattaactttttctgcagtgtttcatatgaatgaa
aaatgtgagattaaaaatgaatggtttggaagaacggtaacctatagcgatgctcgtttt
gcctatgaagaagcacaggcaatcattgagcagaatgtcacactgagcgcagtcgaagtg
tttcagttagataaaattaacacaagcatttctaaagaagtttctcttacgggagaagct
tacaataccttaccggaaatagcacaagctattttaaaaatggatgaattagctaaaaaa
atgcgtgctaaacgtatgatttctggtgctatttctttcgataaagtagaggtaaagttt
aatttagatgaaaacgcaaaccctgttggggtgttttttaaaaccagtaaagatgctaat
aaattaattgaagaatttatgctattagcaaaccgaaaagtatcagaatttataggaaaa
aaagatcctaaaaaaactttcgtatatcgtattcatgacgaaccagacgatagtaaatta
gctaatttacaaggtattgtatctaaatttggatataaactaaattttaaagaccgtaaa
acaacatcagcatcacttaattatttattaaaagaagtaagtggtaaaaaagaacaaaat
ttagtagatactttaacaataagaagtatgagtaaagctgaatattctacgcagaatatt
gggcattatggattagcattcgattattatagtcattttacatcacctattcgtcgttat
cctgatgtgatggcgcatagattattgcaacattatttagatggtggaaaatcggctaac
gaaactgtttacgaggaaaaatgcaaccactccagtaacatggaaaatttagcaaccaaa
gcagaacgggattctataaaatacatgcaaattaaattcatgcaagatcataaagatgaa
aattttgtaggtgttatttcaggtgtaaccgattggggcatttatgtagaaataatagta
aacaaatgtgaaggtatggtaagtgtccgtgatatgaatgatgaccattatgcgtttgac
caagaacaatatgctatggttggtagaaatagaaaaataatgtatcaattaggcgatgaa
gttattgtaaaagttaaaaatgctgatttggttaaaaaacatcttgattttaatttaata
ggaaaaaatgaatag
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