Mariniflexile sp. TRM1-10: CJ739_2597
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Entry
CJ739_2597 CDS
T05592
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
marf
Mariniflexile sp. TRM1-10
Pathway
marf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
marf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJ739_2597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
marf03019
]
CJ739_2597
Enzymes [BR:
marf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CJ739_2597
Messenger RNA biogenesis [BR:
marf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CJ739_2597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
P-loop_SecA
AAA_22
Fe-ADH
CMS1
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
AXP81670
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All DBs
Position
3071275..3072564
Genome browser
AA seq
429 aa
AA seq
DB search
MQFNSLGLSQALLKAISKKGYTTPSPIQQKAIPPILQGKDVLASAQTGTGKTAGFTLPLL
HILSENPKEKYRPIRALILTPTRELAAQVYANVKEYSEFLELRSAVIFGGVNQNPQVTTM
RQGIDVLVATPGRLLDLINQNHISLKRVEILVLDEADRMLDMGFLRDIERIIKLMPEKRQ
NLMFSATFSSDIKKLAHGILNNPVQVEATPENTTVDAISQKVYRVAKGLKTDLIIKLISD
GNWKQVLVFTRTKHGANKLCEKMAKAGIKAAAIHGNKSQGARTKALGGFKSGSVSVLVAT
DIAARGLDIPLLPHVINFELPNISEDYVHRIGRTGRAGASGEALSLVSADETTFLRDIEK
LVGIKIPVEIVAGFEPDPNASTEPEKRQQRGGGNRSRNNERSANSNTQKNDSSRRPKRNN
DRRRNDRRN
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttaattcattaggcttatcccaagccttgctaaaagctattagcaaaaaggga
tacacaaccccaagtcctattcaacaaaaagccattccacctattttacaaggtaaagat
gtattggcaagtgcacaaacgggtacgggtaaaacagcaggttttacattaccgctttta
catattttatcagaaaatccaaaagaaaaatacagacccattcgtgcgttaattttaacg
ccaacgcgagaattggcagcacaagtatatgcaaacgtcaaagagtacagtgagttttta
gaactgcgaagtgctgttatttttggaggcgtcaatcaaaacccacaagtaacaacgatg
cgtcaaggtattgacgtgttggtggcaacaccagggcggttattggatttaataaatcag
aaccatatatctttaaaacgtgttgagattttggttttggatgaagctgaccgcatgctc
gatatgggttttttacgcgatatagaacgtattattaaactcatgccagagaaacgccaa
aacttaatgttttcggcaactttttcatccgatattaaaaaactggcacatggtatttta
aacaatcctgtgcaggtagaagccacacctgaaaacacaacggttgatgccatttcacaa
aaagtatatcgcgtagctaaaggtttaaaaaccgatttgattattaaattaatctcagat
ggcaattggaaacaagtgttggtttttacgcgaaccaaacatggcgccaataaactatgt
gaaaaaatggcaaaagcaggtataaaagctgccgctatacatggtaataaaagtcagggc
gcacgtaccaaagcattgggtggttttaaaagcggaagtgtgagtgttttggttgcgacc
gatattgcggctcgtggtttggatatcccgttattaccacacgttattaattttgaattg
cctaacatttctgaagattatgtacacagaattggaagaacgggtagagcaggagctagt
ggtgaagcgctttcgttagtgagcgccgatgaaactacctttttacgtgatattgaaaag
ttagttggaattaagattcctgttgaaatagtggcaggttttgaacccgacccgaatgct
tctaccgagcctgaaaaacgccaacaacgtggaggaggaaatcgttctagaaacaacgag
aggtctgctaattcgaatactcaaaaaaacgatagtagccgacgcccaaaacgcaataat
gacagacgtagaaacgacagacgtaattaa
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