Mariniflexile sp. TRM1-10: CJ739_292
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Entry
CJ739_292 CDS
T05592
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
marf
Mariniflexile sp. TRM1-10
Pathway
marf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
marf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJ739_292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
marf03021
]
CJ739_292
03019 Messenger RNA biogenesis [BR:
marf03019
]
CJ739_292
Transcription machinery [BR:
marf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CJ739_292
Messenger RNA biogenesis [BR:
marf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CJ739_292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
OB_RNB
AAA_22
NACHT
AAA
Ndc1_Nup
Motif
Other DBs
NCBI-ProteinID:
AXP79391
LinkDB
All DBs
Position
289093..290766
Genome browser
AA seq
557 aa
AA seq
DB search
MFEISQLNEKKLSDLQEIAQKLNVPKYRSLKKADLVYQILDHQAANPKAVEAVVEPTPQP
TVNTTEKTEKKEPKKPRQRVTKPVKNTPIKQEQKPVAEKAAAPIEKTEKAPQETKEDNKP
VNPPKPRVQNERPNDNQQKPANQKREHNPNQSQKNQNQHKNQKNGNVNVDAGNKDTRNRY
REPDFEFDAIIESEGVLDVMQDGYGFLRSSDYNYLSSPDDIYVSQSQIRLFGLKKGDTVL
GNVRPPKEGEKYFPLIKVIRINGQKPEVVRDRVSFEHLTPLFPKEKFNLAEKQSTISTRI
MDLFSPIGKGQRGMIVSQPKTGKTMLLKDVANAIAANHPEVYLMILLIDERPEEVTDMQR
NVRGEVISSTFDKEAHEHVKIADIVLEKAKRLVECGHDVVILLDSITRLARAYNTVQPAS
GKILSGGVDANALHKPKRFFGAARNIENGGSLTIIATALTDTGSKMDEVIFEEFKGTGNM
ELQLDRKISNRRIFPAIDLTSSSTRRDDLLLDENTIQRMWVMRKYLADMNPVEAMEFINE
RFKQTRNNEEFLISMNG
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaatttcacaattaaacgaaaagaaactctctgatttacaagagattgcgcag
aagttgaacgtcccaaaataccgttctttaaaaaaagcggatttagtttatcaaatacta
gatcaccaagctgcaaacccaaaagctgttgaagccgttgtagaaccaacgccacaacct
accgttaatactacagaaaaaacagaaaaaaaggaaccaaaaaaacctaggcaacgtgtt
acaaagcctgtaaaaaatacacctataaaacaagagcaaaaacctgtagctgaaaaagca
gcggctcctatagaaaaaacagaaaaagcccctcaagaaactaaagaagacaataagcca
gttaacccaccaaaacctagagttcaaaacgagcgtccaaacgacaatcagcaaaaaccg
gcaaaccaaaaaagagagcacaacccaaaccaatctcaaaaaaatcaaaatcaacataaa
aaccaaaaaaatggtaatgtgaatgtggatgctggaaataaagataccagaaaccgttac
cgcgaaccagattttgaatttgatgccattattgaaagtgaaggtgttttagatgttatg
caagatggatatggttttttacgctcatcggactataactatttatcatcgcctgatgat
atttatgtgtcacaatcgcaaattcgtttgttcggattaaagaaaggcgatacggtttta
ggaaacgtacgtcctccaaaagaaggtgaaaaatactttcctttaattaaagtcataaga
attaatggtcagaaaccagaagttgttagagaccgtgtgtctttcgaacatttaacacca
ttatttcctaaagaaaaattcaatttagctgaaaaacaaagcaccatttctacgcgaatt
atggatttgttttctccaattggaaaaggacaacgtggtatgatcgtatcgcaaccaaaa
acaggtaaaactatgttacttaaagatgttgccaatgctattgctgccaaccatcctgag
gtatatttaatgattttactaattgatgaacgtccggaagaagttaccgatatgcaacgt
aatgtacgtggcgaagtcatatcttcaacctttgataaagaagcacacgagcacgttaaa
atcgccgatattgtccttgaaaaagcaaaacgtttggtagaatgcgggcacgacgtagta
attcttttagattctattacgcgtttagcaagagcttataacactgtgcaaccggcctct
ggcaaaatattaagtggtggtgtagatgccaatgcattacacaaaccaaaacgtttcttt
ggtgcagccagaaatattgaaaacggcggctctttaaccattatcgctacggcacttaca
gatacaggttctaaaatggacgaagtcatttttgaagaatttaaaggaactggtaacatg
gaactacagttggatagaaaaatatcgaaccgtcgtattttccctgctatcgatttaaca
tcttcgagcacgcgtcgcgatgatttactattagatgaaaacaccatacaacgcatgtgg
gtaatgcgcaagtaccttgctgacatgaaccctgttgaagctatggaattcattaacgaa
cgttttaaacaaaccagaaacaacgaagaatttttaatatccatgaatggataa
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