Mariniflexile rhizosphaerae: CJ739_3964
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Entry
CJ739_3964 CDS
T05592
Name
(GenBank) Excinuclease cho
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
marf
Mariniflexile rhizosphaerae
Pathway
marf03030
DNA replication
marf03430
Mismatch repair
marf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
marf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CJ739_3964
03430 Mismatch repair
CJ739_3964
03440 Homologous recombination
CJ739_3964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
marf03032
]
CJ739_3964
03400 DNA repair and recombination proteins [BR:
marf03400
]
CJ739_3964
Enzymes [BR:
marf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CJ739_3964
DNA replication proteins [BR:
marf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CJ739_3964
DNA repair and recombination proteins [BR:
marf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CJ739_3964
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
GIY_YIG_2
DEDDh_C
DNA_pol_A_exo1
DUF7508
DUF123
T5orf172
Motif
Other DBs
NCBI-ProteinID:
AXP83022
LinkDB
All DBs
Position
4741959..4743146
Genome browser
AA seq
395 aa
AA seq
DB search
MLRHAPKFYEVAKRIVEITEDCILVAHNAQFDYRILCTEFGRLGFEYVRPSLCTVELAKD
LIPDQPSYSLGKLVRSLGIPVADRHRASGDALATVKLFQMLLDKDTAKSIIQQSIRLNPK
LQLEPRHLDIINELPPITGVYYIHKSDGEIIYIGKSSNIKKRINQHFTNTNQKSKRIQAH
VTAVTYEATGSELVALLKESEEIKRVKPIYNRALRRTVFTHALYSFVDDNNYINLKIDVV
DGRKNPITTFSNRESGKSFITKAVEEYKLCQKLTGLYKTKTSCFNYDIKTCEGACIEKEP
AESYNKRVEALINKNSYKNKNMVIIDKGRDIDEHSAILIENGVFKGLGFFNLNYQINNIE
VLESIITPMKNNRDTQHIIQSYLRRNNRVKIILFD
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgttacgccatgcgcctaaattttatgaggtagcaaaacgcattgttgaaattacagaa
gattgcattttagtagcccacaatgcgcaatttgattaccgtattttatgtacagaattt
ggtcgtttaggttttgagtatgtgcgtccgtcactttgtaccgttgaacttgccaaagat
ttaataccagaccaaccatcatacagcttaggaaaattagtgcgctcacttggaattcct
gttgccgatagacatcgggcatctggtgatgctttagctacagttaaactgtttcaaatg
cttttagacaaagacactgcaaaaagcatcattcaacaatctatccgattgaatccaaag
cttcaactagaacctaggcatttagacattattaatgagttgcctcctattacaggcgtg
tattacatccataagtctgatggagaaatcatctatattggaaaaagcagtaatataaaa
aaacgcatcaaccaacactttacgaataccaatcaaaaatcaaaaagaatacaagcacat
gttaccgctgtaacctatgaagcaaccggtagtgaacttgttgcccttttaaaggaaagt
gaagaaattaaacgcgttaaacccatatataacagggcattgagacgtaccgtttttacc
catgccctgtatagctttgtagatgataacaattacataaacctaaaaattgatgtggtt
gatggtcgtaaaaaccccataacaacctttagtaatagggaaagtggcaaaagctttata
acaaaagctgttgaagaatataaattatgccaaaaactaaccggcttatacaaaaccaaa
accagttgttttaactatgatattaagacttgtgaaggtgcctgtattgaaaaagagcct
gccgaatcttacaacaaacgcgttgaggcgttaatcaataaaaacagttataaaaacaaa
aacatggtgattattgataaaggaagggatattgatgagcatagtgccattttaattgaa
aatggtgtgtttaaaggtttaggctttttcaatttaaactatcaaataaacaatattgag
gttttggaatctattattacgcccatgaaaaataatagagatacccaacatattattcaa
agttatcttcgaagaaacaatagagtaaaaataattttgtttgattaa
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