Mycoplasmopsis arginini: MARG145_0061
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Entry
MARG145_0061 CDS
T04176
Symbol
vacB
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
marg
Mycoplasmopsis arginini
Pathway
marg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
marg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MARG145_0061 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
marg03019
]
MARG145_0061 (vacB)
03016 Transfer RNA biogenesis [BR:
marg03016
]
MARG145_0061 (vacB)
Enzymes [BR:
marg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MARG145_0061 (vacB)
Messenger RNA biogenesis [BR:
marg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MARG145_0061 (vacB)
Transfer RNA biogenesis [BR:
marg03016
]
Prokaryotic type
tRNA degradation factors
MARG145_0061 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Peptidase_C78
Motif
Other DBs
NCBI-ProteinID:
BAQ54221
LinkDB
All DBs
Position
50388..52520
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AA seq
710 aa
AA seq
DB search
MKKENTNFKTLDSNEILEFIQNNPLGLSFLEIVKKKKIHPTLNAKLSMILKNLVSENKIE
VKKNNDYAPIFYIKTVQNNVAITNKRLGFIEFEDGEINKSAILFPFEIRNLLDGDLIEAK
IFYYYNENKEVLHKAKIEKLLDHKKKILVGKLIKNQKNFYVFEPLNDKDKGNIEILNKSQ
IPKNIKEDDIVEVSVLNPNNKNIAVAFNKILSNTKDFDYPFKKIFSENEINLDFNENVIL
ESKSLPTEVNSYEISKRKDLRNLLTVTIDGLDTKDFDDAISCYILPNGNTKLFIHIADVS
YYVKENGAIDKEALLRGTSIYLPDKVIPMLPFELSNGICSLNPNVDRCTITLELEIDNNG
NNVDEKIYESVINSNYRSTYNEVNDYFENKIKLPTELENLLNDSRNISKVIRNCKLQDGY
VNFEIKEPKIIIQDNKVIGIEIREEGESENMIEDFMVRANETIASIMSKKNIPSIYRIHD
KPSDEKLFELQELIKFANYKDVQVPFDGEPLSFAKMVNKIKEKGLSEYFKNAFLRTMQKA
IYSSNNIGHFGLASKFYSHFTSPIRRYPDLLLHRLIKKYLFENKTFSDQEFEEISNQIEN
IANLNSLSEKTAMTVERNIVDIRKAEYFESLINKEFLATLVSIEKFGLFLNINEFQTSVL
IRFEDLNDEVVKISNFEAKGNKYNFKVGKDYCIKIESIEREKGNINAKLC
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagaaaatacgaactttaaaactttagattcaaatgaaattttggaatttatt
caaaataatcctttgggtctaagttttttagaaatagtaaaaaagaaaaaaatacatcca
acattaaacgctaagctttccatgattttaaaaaatcttgtttctgaaaataaaatagaa
gttaaaaaaaataatgattatgctcctattttttatataaaaactgtgcaaaataatgtt
gcaataaccaataaaagattagggttcattgaatttgaagatggcgaaattaataagtct
gcgattttatttccttttgaaattagaaatcttttagatggagatttaattgaggctaaa
atattttattattacaatgaaaacaaagaagttttgcataaagcaaaaattgaaaaatta
ttagatcataagaaaaaaatccttgtgggtaaattgattaaaaatcaaaaaaacttttat
gtttttgaaccattaaatgataaagataagggaaatattgaaattttaaataaaagtcaa
attcctaaaaatatcaaagaagatgatattgttgaagtttcagttttaaatcctaacaac
aagaatatcgctgtggcttttaataaaattttaagtaacacaaaagattttgattatcca
tttaaaaaaatattttcagaaaatgagattaatttagattttaatgaaaatgttatcttg
gagtctaaatctttacctacagaagttaatagctatgaaatttcaaaaagaaaagattta
agaaacttactaaccgttacaattgatggattagatacaaaggattttgacgacgctata
tcatgttatatcttaccaaatggaaacactaagctttttattcatattgctgacgtatcc
tattatgttaaagaaaatggtgctattgataaagaagcgctattgagaggaacttctata
tacttaccagataaggtaattccaatgctcccatttgagctatctaatggaatttgttcg
ctaaaccctaatgtggatagatgtacaataactttagaacttgagatcgataataatgga
aataatgttgatgaaaaaatttatgaaagcgtcattaattctaactatcgttcgacttac
aatgaggtaaacgattattttgaaaataaaataaaattgccaaccgaattagagaatctt
cttaatgattcgagaaatatttctaaagttattcgaaattgcaaattgcaagatggatac
gttaattttgaaattaaggaacctaagattattattcaagataataaggttataggaatt
gaaataagagaagaaggtgaaagtgaaaatatgattgaggactttatggttagggctaat
gaaacaattgcttcaatcatgagcaaaaaaaatattccatcaatttaccgtattcacgat
aaaccttcagatgaaaaattatttgaattacaagaattaattaaatttgcaaattataaa
gatgttcaagtgccatttgatggtgaaccactaagttttgcgaaaatggtaaataagatt
aaagaaaaagggctaagtgaatactttaaaaatgcatttttaagaacaatgcagaaggct
atttattcttctaataatattggtcattttggtttagcttcaaagttttattctcatttt
acttccccaattagaagatatcctgatttgttattgcatcgtttaattaaaaaatactta
tttgaaaataaaactttttctgatcaagaatttgaagaaatttcaaatcaaattgaaaat
attgcaaatctcaattcattaagcgaaaaaacagcaatgacagtagaaagaaatattgta
gatattagaaaagctgagtattttgaatcattaataaataaagaatttttagcaacatta
gtttcgatagaaaaatttggtctatttttaaatatcaacgaatttcaaacaagtgtatta
attagatttgaagacttaaatgatgaagttgttaaaatatctaattttgaagcaaaagga
aataaatataattttaaagttggaaaagattactgtataaagatcgaaagtatagaaaga
gaaaaaggaaatattaatgcaaaattgtgttaa
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