Candidatus Mancarchaeum acidiphilum Mia14: Mia14_0003
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Entry
Mia14_0003 CDS
T05015
Name
(GenBank) tRNA splicing endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
marh
Candidatus Mancarchaeum acidiphilum Mia14
Brite
KEGG Orthology (KO) [BR:
marh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
marh03016
]
Mia14_0003
Enzymes [BR:
marh01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
Mia14_0003
Transfer RNA biogenesis [BR:
marh03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
Mia14_0003
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
tRNA_int_end_N2
Sen15
Rad9_Rad53_bind
Motif
Other DBs
NCBI-ProteinID:
ASI13352
UniProt:
A0A218NLN1
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All DBs
Position
3598..4770
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AA seq
390 aa
AA seq
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MALMLRYDSKNHSAYSTDQSTIDILRNGFIGDFKNGRLSLIPEEALYLMDVRNSECVTAK
GKYIDFVQLAHKNRKSKKFMARYFTYKDWRDRGLIIVPPWRITQLPEEKRPISVKTYPAE
KLKLKKFMASGIFFPYDMVTIIKDESIGKYLYDTQWFGQYGTYKLADHGSLNKLDIYETL
FLMDSKRLSVEGYSRSDIIKAGVSMRDDFRKLYSVYKDWRKRGYVVKTGFKFGTHFRIYF
PGANPTNQNSEWVHSRHVLHVFPRNSKLLISEWARAIRVAHSVRKTFILAIPGKSRAKKL
DIDFILYHREKGKIEDPKTVYPKYSMLSLSENEYIGGSELSAIISKSQSINLELIIAIMD
RETAVTYYKVRKINLPMSRYEYYEIDWMQP
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atggccctgatgcttaggtacgattcaaagaaccattctgcatattcaactgaccagtcg
acaatagacatattaaggaatgggtttataggagattttaaaaatggcaggttaagttta
ataccggaggaagccctttacctaatggatgtcaggaatagcgagtgcgtaaccgccaaa
gggaagtatatagattttgtgcaattagcccacaagaacagaaaatcaaagaaattcatg
gcacgctattttacatataaagactggagagatagaggtcttattatagttcccccatgg
cgcataactcagctgcccgaggaaaaaaggccaataagcgttaagacatatcccgcggaa
aaattaaagcttaagaagttcatggcatcaggcatatttttcccctatgatatggtaact
ataataaaggacgaatcaatagggaagtacctttatgacactcaatggtttggccaatat
gggacttacaaactagccgaccatgggtcattgaacaaactggatatatacgaaaccctt
ttcctgatggactcaaaacgcctttctgtggagggctacagcaggtcggatataataaaa
gcaggagtgagcatgagggacgatttccgcaagctatactcagtttataaggattggagg
aaaaggggctacgtagtgaaaacaggattcaagttcggtacacatttcaggatttacttc
cccggagcaaatccaaccaaccagaattccgaatgggtacattcaaggcacgtcttacac
gtctttccaagaaacagcaaacttctaatatcagaatgggcaagagccataagggtcgcc
cattccgtaaggaaaaccttcatacttgcaattccaggcaaaagccgtgcaaagaagctt
gacatagattttatactttatcacagggagaagggaaagattgaagaccctaaaacagta
taccctaaatacagcatgctttcgctaagtgaaaacgaatatattggaggcagtgagtta
tccgctataataagcaagtcacaatcaattaatctagaacttataattgcaatcatggat
agggaaacagcagtgacttattacaaggtacggaaaataaaccttcctatgagcagatac
gagtactacgagatagactggatgcagccatga
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