Candidatus Mancarchaeum acidiphilum Mia14: Mia14_0052
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Entry
Mia14_0052 CDS
T05015
Name
(GenBank) exosome complex RNA-binding protein Rrp42
KO
K12589
exosome complex component RRP42
Organism
marh
Candidatus Mancarchaeum acidiphilum Mia14
Pathway
marh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
marh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mia14_0052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
marh03019
]
Mia14_0052
Messenger RNA biogenesis [BR:
marh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Mia14_0052
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
Mia14_0052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
ASI13395
UniProt:
A0A218NLN6
LinkDB
All DBs
Position
37943..38722
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AA seq
259 aa
AA seq
DB search
MDAMSKMKSNYVKKLSEEGKREDSRDAFSFREIKITKGIIEHAEGSAQVDIGDTRVIAGV
KMVVESPHDDTPNEGNLIVSVTILPMAATEYESGPPSPEEIELSRVTDRGIRSAVSIDPA
SLFIEEGKVWSVYVDVYVLNYSGNMLDAASIAAMAALTNARVPEYKDGSANYEKRDKKLS
IKNVVTSTTFAKIGDSLFLDANENEESAMNARLTIQVDDTQIRAMQKGLSGSFTMEEINK
LIDISFDKHKELKGLIIKE
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
ttggatgcaatgtctaagatgaaatcaaattatgtaaagaagctttccgaagaagggaag
cgcgaggattcaagagacgcctttagctttagagagataaagataaccaagggcatcata
gagcacgcagaaggctctgcgcaggtagatatcggggatacaagagtgattgcaggggtg
aagatggtagttgaatcgccccatgatgatacgccaaatgagggaaacttgatagtgtcc
gttacgatattgcctatggcggccacggaatacgaatccgggcctccctcgcctgaagaa
atagagctgtcaagggttaccgacagagggattcgctctgcggtgtcaatagaccctgca
agccttttcatagaagaggggaaagtgtggagcgtgtacgtagacgtatacgtgctcaac
tacagtggaaacatgctcgatgcggcaagcattgccgcgatggcagcgctaaccaacgca
agagtgccggaatacaaggacggttcagccaattatgaaaagagggacaaaaaattaagc
ataaagaatgtggtaacttcaacaacattcgcaaaaatcggggattcattgttccttgac
gcgaacgagaatgaggaatccgcgatgaatgcaaggcttaccatacaggttgatgacaca
cagataagggccatgcagaagggcctttcagggagctttacgatggaggaaataaataag
cttatagatatttcttttgataaacataaggaactgaaagggcttataataaaagagtga
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