Marinobacter sp. CP1: ACP86_21690
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Entry
ACP86_21690 CDS
T04052
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mari
Marinobacter sp. CP1
Brite
KEGG Orthology (KO) [BR:
mari00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mari03019
]
ACP86_21690
Enzymes [BR:
mari01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ACP86_21690
Messenger RNA biogenesis [BR:
mari03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ACP86_21690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
ResIII
NACHT
AAA_23
ABC_tran
AAA_30
SRP54
T2SSE
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AKV98859
UniProt:
A0A0K1UH24
LinkDB
All DBs
Position
complement(4718360..4722223)
Genome browser
AA seq
1287 aa
AA seq
DB search
MMEQLDACNQQEAARIVKTVARTKGKPGQKDLEKMANWLERGLEKVQQRHALHKPASFPE
GLPVSERVDDIREAIENHQVVIIAGETGSGKTTQIPKICMNSGRGIRGLIGHTQPRRIAA
RSVAARIAEEIGEQTGQQIGYQVRFTDNTSEQSRVKVMTDGILLAEVQHDRFLDRYDTII
IDEAHERSLNIDFLLGYLRQLLPKRPDLKVIITSATIEVERFSEFFDKAPVIEVSGRTYP
VDVRYRPLTGDEDDRDQGWTDGVLGALDEIEQHERSQKQPPGDILVFLPGEREIRNLSKV
LRHVDLRHTEVLPLYSRLSNAEQNRVFQSHKGRRIVLSTNVAETSLTVPGIRYVIDTGVA
RISRYSVRSKIQRLPVEPISQASANQRAGRCGRVAPGICFRLYDETDFINRPEYTDPEIL
RTNLASVILQMATSGLGEIRQFPFLEAPDKRQVNDGYKLLEELGAVDDKRRVTRLGRTMA
RLPLDPRLARMLVTAAELGSLSETLVIIAGLSIQDPRERPQDKQQAADQAHAPFNDKESD
FLTLLNVWNFYEEQRQELSQNQLKKVCQKSFLSWMRMREWRDIHRQLTLICREQKLMVNK
DAASYEALHKAILAGLLGQVAVKVEKKEYLATRNRKVLIFPGSKVAKTGPKWIVATEIVE
TSRVFARVVASIQPEWIEPLAGHIVKHHYFEPHWEQKRAQVMGYEKVTLYGLDIVAKRRI
PYAKVDPAECRNLFIRRALVEGDYRSKAPFIARNREMLDTVENLEKKTRRRDLLVDDEVL
VAFYDERLPSDIISGRHFETWWKGLPAEQLKELELTETDILQRPVDAQAADLYPDYLEWE
GVRYPLSYEFEPTSEKDGVTLQVPLMALKQIPSRRLEWLVPGLLREKCIALVKSLPKALR
RNFVPVPDFVDAALENLQPSNQPLTLQLGEQLQRMTGVQIDPDAWTDSELPKHLRMNLRV
MGDGGRAIAESRETADLQHQLEGQAEQALASATQGDAATEPSGEYTEWQFGALPEQVQTE
KGGMQVTVYPALEDLGKQVRQIRCLDRLTAEDTTRKAIARLIINRFGRTLDDLERKLPRF
KQSALMFAPVGQSKVLLDDLLLATAMQHFITDEIPRTAEGFDRVFDAHRGDFVPALEQAD
ERLYQAMSGYQKVAKQLKGKINLAMANSMADLKFQLQNLVYPGFLVETPPEWLAEFGRYF
EAALVRLEKMPREMGQEREFLHTIEPLWSRYAVKRDEQQRQGVRDPELVLYRWMLEEFRV
SFFAQQLGTVMTVSVKRLDRQWEKTKV
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atgatggagcagctggacgcctgcaatcagcaggaagccgcccgtattgtgaaaacggtg
gcccgtaccaagggcaaaccgggccagaaagacctggagaaaatggccaactggctggag
cgtggcctggaaaaggttcagcagcgccacgctttgcacaagccggccagcttccccgag
ggccttccggtctccgagcgtgtggatgatatccgtgaggccatcgaaaaccatcaggtg
gtaatcattgcgggtgagaccggttctggcaaaaccacccagatacccaaaatctgcatg
aacagtggccgtggtattcgtggcctgatcggtcatacccagcctcggcggatcgccgcc
cgcagtgtggctgcccgtattgccgaggagataggtgagcagaccggtcagcagatcggg
tatcaggttcgttttaccgataacacctccgagcaatcccgtgtaaaggtgatgaccgac
ggcatcctgctggcggaggttcagcacgaccggtttctggaccggtacgatacgatcatc
atcgatgaagcccacgagcgcagtctcaacatcgattttctgctgggctacctgcgccag
cttttgcccaaacgcccggatctgaaggtcatcatcacgtcggccaccattgaggtcgag
cgcttcagcgagttcttcgacaaggcgcccgtgatcgaggtgagcggccgaacctatccg
gtggacgtgcgctatcggccactgactggagatgaagacgaccgggatcagggttggacg
gatggcgtgctgggtgcccttgatgaaatcgagcagcacgagcgcagccagaaacagccg
cctggagatattctggtttttctgcccggcgagcgcgagattcgcaacctcagcaaggtt
cttcgccacgtcgacctgcgccataccgaagtgcttccgctgtattcccgattgagcaac
gccgagcagaatcgggttttccagtcccacaaggggcgacggatcgtgttatccaccaac
gtggcggagacctctctgacggtgccgggtattcggtacgtgatcgataccggtgttgcc
cggatcagtcgttacagcgtgcgctcgaagatccagcgcctgccggtggaacctatttcc
caggcgagcgccaaccagagggcagggcgttgcggtcgtgttgccccgggcatctgtttc
cgcctgtacgatgagacggacttcatcaaccgccccgaatacaccgatccggaaatcctg
cgaaccaacctggcgtccgtcattctgcagatggccacttcaggtttgggggagattcgc
cagttcccatttcttgaggcgccggataagcgccaggtaaacgacggctacaagctcctt
gaagagttgggcgcggtggatgacaaacgacgcgtcacccgccttggtcgaaccatggca
cggctgcctctggacccgcgcctggccaggatgctggtcaccgccgccgagctggggagt
ctttcggaaacgctggtgatcattgccgggctgagtattcaggacccccgggaacgcccc
caggacaagcagcaggctgcggatcaggcccacgcgcctttcaatgacaaagaatccgat
tttctgacgctactgaatgtctggaacttctacgaagaacagcgtcaggaattgtcccag
aatcagctcaaaaaggtctgccagaagagtttcctgagttggatgcggatgcgggaatgg
cgggatatccatcgccaactcaccttgatctgccgggaacaaaaattgatggtcaacaag
gatgccgccagttatgaagcgctgcacaaggcgattctggcgggtctcctgggtcaggtg
gcggtgaaagtggagaaaaaggaatacctggcaacacgaaaccgcaaagtcctgatcttt
cccggttcgaaggtcgccaagactggcccgaaatggattgtggccaccgagatcgtggag
accagtcgggtgttcgcccgggtggtggcctccattcaaccggagtggattgagcccctg
gccggacatatcgtcaagcaccactactttgagccccactgggagcagaagcgggcccag
gtgatgggctatgaaaaggtgaccctttacggcctcgatatcgtggccaagcgccgcatt
ccttacgccaaggtggatccggcggaatgccgaaatctgtttatccggcgagccctggtg
gagggggattaccgatcaaaggcgccctttatcgcccgtaacagggaaatgctcgacacg
gttgagaatctggagaagaagacccggcggcgtgacctgctcgttgacgatgaagtgctg
gtggccttctatgatgaacgcctgccgtcagacatcatcagtggccggcatttcgagacc
tggtggaaagggctaccggcggaacagttgaaagaactggagctcaccgaaaccgacatt
cttcagcgaccggttgatgcccaggccgctgacctgtacccggactatctggagtgggag
ggtgttcgatacccactgagctatgagttcgaacccaccagtgaaaaggacggcgttacg
cttcaggtgcccttgatggcgctcaagcagataccgtcccgtcgcctggaatggctggtg
ccgggactgttgagagagaagtgcattgccctggtgaaatccctgcccaaggcattgcgc
cggaatttcgttccggtgccggatttcgtggatgccgctctcgaaaatcttcagccttcc
aaccaaccgctgacgcttcagcttggcgagcagttgcagcgcatgaccggcgtgcagatt
gatcctgatgcctggaccgatagcgaattgccaaaacacttgcggatgaaccttcgcgtt
atgggtgacggcggtcgcgccattgcagagagccgagaaacggcagatcttcagcaccag
cttgagggtcaggccgagcaggcactggcctcggcaactcagggtgatgcggcaacggaa
ccgagtggcgagtacacggaatggcagttcggtgcattgcctgaacaggtacagacagaa
aaaggcggtatgcaggtgactgtgtatcccgccctggaggaccttggcaaacaggtgcgc
cagatacgttgtctggatcggctgaccgctgaagatacgactcggaaggcgatcgcccga
ttgatcattaaccggtttggccgaacccttgatgatctggagcgtaagctcccccggttt
aaacagtctgcgctcatgtttgctccggtgggtcagtcgaaagtgttgttggacgatctg
ctgttggcgaccgccatgcagcactttattacggacgaaattccgaggacagcagagggc
ttcgacagggtgtttgatgctcaccgaggggatttcgttcctgcactggagcaggcagac
gaacggctgtatcaggccatgtccggttaccagaaagtggcgaaacagttaaaaggtaag
atcaatctggccatggccaacagcatggcggatctcaagtttcagctgcagaaccttgtg
tatccaggattcctggttgagacgccgccagagtggctggcggagttcgggcgctatttt
gaggcggctctggttcggctggagaagatgccccgggaaatgggccaggaacgggaattt
ctccacaccattgagccgctctggtcccggtatgctgtcaagcgggacgaacagcaacgg
cagggcgttcgagaccccgagctggtgctgtaccgctggatgctggaagaattccgggtg
tcgttttttgcacagcaactgggcacggtgatgactgtgtccgtaaaacgattggaccgg
cagtgggagaaaacgaaggtctga
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