Marinobacter sp. JH2: MARI_03540
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Entry
MARI_03540 CDS
T06162
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
marj
Marinobacter sp. JH2
Pathway
marj03030
DNA replication
marj03430
Mismatch repair
marj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
marj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MARI_03540 (holA)
03430 Mismatch repair
MARI_03540 (holA)
03440 Homologous recombination
MARI_03540 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
marj03032
]
MARI_03540 (holA)
03400 DNA repair and recombination proteins [BR:
marj03400
]
MARI_03540 (holA)
Enzymes [BR:
marj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MARI_03540 (holA)
DNA replication proteins [BR:
marj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
MARI_03540 (holA)
DNA repair and recombination proteins [BR:
marj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
MARI_03540 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delt_C
DNA_pol3_delta_C
Hda_lid
Motif
Other DBs
NCBI-ProteinID:
QBM16274
LinkDB
All DBs
Position
complement(358558..359565)
Genome browser
AA seq
335 aa
AA seq
DB search
MKIQAGQLPQTLKKGLAPVYLVSGDEPLLVQECCDQIRKAAKSAGFHDRLTYHADQQLDW
GSVANECNAMSLFAEKRRIEIHLPTGKLGDGRKVMEQILQSPPEDVILLLISAKLDAAET
KRKWYKDLQANGVHVPVWPVDSDKFTGWLQQRASNHGLHITRAALTMLSERLEGNLLAAS
QELDRLTLLADGQTIDEETIEMAVQDSARFNGFELVTELLAGKAAHAGKIIGILQQEGEN
PLGLLSVLVRDLHLIIELKTALPPGDNPASFLKKRGVFQPKRAGAIQQAARRLSLAQLHR
AIQLCGTTDRAAKGYGDLPPWHHLRDLSALLAGAH
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattcaggccggccaactccctcaaacgttaaaaaagggtcttgcaccggtttac
ctcgtctcgggcgatgaaccgctactggttcaggagtgctgtgaccagatacgtaaggct
gccaagagtgccggttttcatgaccgcctgacctatcacgctgaccaacagctggactgg
ggttcggtggctaacgaatgcaatgccatgtcgctgttcgccgaaaaacggcgcattgag
attcacttgcctaccggaaaactcggtgatggccgaaaggtgatggagcagatactccaa
tccccgccggaagacgttattctgctgctgatcagcgccaaactcgatgccgccgaaacc
aaacgtaagtggtacaaggatttacaggccaatggcgtgcatgtaccggtttggcctgtg
gattcggacaaatttaccggctggctgcaacagcgggccagcaaccatggcctgcacatt
acccgcgcagccctgacgatgctgtcagagcggctagagggcaacctgcttgccgccagt
caggaactggaccggctgacccttctcgcggacggccaaaccatcgatgaagaaaccatc
gaaatggcggttcaggacagcgcgcgatttaacggatttgagttggttactgaacttctc
gcgggcaaggcggcccatgctggaaagatcatcggtattctgcaacaggaaggcgaaaac
ccattgggcttgctcagtgtgctggttcgagatctgcatctgatcattgaactgaaaaca
gccctgccccctggcgataatccggccagctttctgaaaaagcgcggggtgttccagccc
aagcgagcgggggctatccagcaggcagcgcgcaggctaagcttggctcaattgcatcgt
gccattcagctttgcggtactaccgatcgcgcggccaagggatacggcgatcttccgccg
tggcaccatctcagagatctttcggctctgcttgccggcgcccactga
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