Marinobacter sp. JH2: MARI_09000
Help
Entry
MARI_09000 CDS
T06162
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
marj
Marinobacter sp. JH2
Brite
KEGG Orthology (KO) [BR:
marj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
marj03032
]
MARI_09000 (topA)
03400 DNA repair and recombination proteins [BR:
marj03400
]
MARI_09000 (topA)
Enzymes [BR:
marj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
MARI_09000 (topA)
DNA replication proteins [BR:
marj03032
]
Prokaryotic type
DNA Topoisomerases
MARI_09000 (topA)
DNA repair and recombination proteins [BR:
marj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
MARI_09000 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QBM16804
LinkDB
All DBs
Position
960302..962944
Genome browser
AA seq
880 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGSDFIVKSSVGHIRDLPVSGSGSQSDPKERAKQAAATRK
LSPEEKVEHKKRKAKEQLVARMGVDPDRDWSARYEVLPGKEKVVSELKRLAKSADHIYLA
TDLDREGEAIAWHLQETIGGEADKYRRVVFNEITKRAIQEAFEDPGNLDTDRVNAQQARR
FLDRVVGYMVSPLLWSKIARGLSAGRVQSVAVRLIVEREREIRKFVPEEFWQLHADLNPN
KAQQPVRFEVTRHAGKPYRPVNEAESNEHVARLKEGGFKVAKREDKPTRSKPSAPFITST
LQQAASNRMGFSVKKTMMLAQRLYEAGYITYMRTDSTNLSKDAVESCRDFVQKQFGDRYL
PDAPRLYGSKEGAQEAHEAIRPSEVTRRPSDISGLEKDAEKLYDLIWRQFIACQMADAEF
LSTSIVVANGDYELRTRGRIVKFEGFLKAAPQSSKKDDDVALPDIKIDEALDLNKLDPTQ
HFTKPSPRYTEASLVKELEKQGIGRPSTYASIISTIQDRGYVRLQNRRFYAEKMGEIVTE
RLAESFPNLMDYDFTARLEDELDHIAGGEVKWKKVLNDFYAKFRKQLDSASQTEGGMRAN
TPTETDIPCPSCGRNMQIRVASTGVFLGCSGYALPPKERCKTTINLVSGDEVVSADEDVE
GEGETRLLRMKRRCGKCGTAMDSYLVDEARKLHVCGNNPDCSGYEVEQGTFRIKGYDGPT
LECDKCGSEMQLKTGRFGKYFGCTSDDCKNTRKLLKSGEPAPPKMDPVPMPELQCQKVDD
TYVLRDGASGLFLAASKFPKNRETRPPLVMEIKPHRKEIDPKHDYLMDAPEKDPEGNPTV
IRYSRKTKEQYVMSENDGKATGWSAWYEGGRWVPRDKKKK
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaaagtctcgttattgtcgagtctccagcgaaagcgaagaccatcaacaagtat
ctgggctctgacttcattgttaagtcgagcgttggccacattcgtgacctgccagtcagt
ggcagtggcagtcagtctgacccgaaagaacgggctaagcaggcggctgcaacacgcaag
ttgagtcctgaggaaaaggtcgaacacaaaaagcgcaaggccaaggagcaactggtcgcg
cgcatgggtgtcgatccggatcgcgactggagtgcgcgatacgaagtcttgccgggcaaa
gaaaaggtggtcagtgagctgaagcgtttggccaaaagcgcagaccatatttacctcgca
acggatttggatagagagggggaggccatcgcttggcatctccaagagactattggtggt
gaagcagacaaataccgccgggttgtgttcaacgaaattaccaagcgtgccattcaggag
gcgtttgaggacccgggtaatctcgataccgatcgtgtaaacgcgcaacaagctcgccgt
tttctggaccgggttgtgggttatatggtttcgccactgctgtggagcaagattgcccgg
gggttgtcggcgggccgtgttcagtctgttgctgtccgcctgattgttgagcgtgaacgt
gaaatccgtaagtttgtgccggaagagttttggcagttgcatgccgatctgaatccgaat
aaagcacaacagccggtgcgctttgaggttactcggcacgccggtaaaccttatcgccca
gtcaatgaagctgagagtaacgagcatgtggctcgcctcaaagagggtggcttcaaggtt
gccaagcgggaagataagccgacccgctcaaagccgtcagcgccattcattacctcgact
ttgcaacaggcggccagtaaccggatgggcttcagcgtaaagaagaccatgatgttggcg
cagcgtttgtacgaggcgggttacatcacctacatgcgtacagactccaccaatctgagt
aaagatgcagtcgagagttgccgggattttgtacaaaagcagtttggcgatcgttatttg
ccggacgccccacgcctatacggtagcaaggaaggcgctcaggaagcgcacgaggctatt
cgtccctctgaggtgactcgtaggccgtctgatatttctggtcttgagaaggacgctgag
aagctctacgacttgatctggcgacagttcattgcatgtcagatggccgatgcggaattc
ctgagtacttctattgtggtggctaatggcgactacgagctgcgtacccgtggtcgcatc
gttaagtttgaaggtttcttgaaggcggcacctcaatcctccaagaaagatgacgatgta
gcgttgcctgacatcaaaattgatgaggcgcttgacctgaataaactggatcccactcag
catttcaccaagccatcgccgcgctatacggaagcgagcttggttaaagagttggagaag
cagggtattggtaggccgtccacctacgcgtcgatcatttccactattcaagaccgcggt
tatgtgcgtttgcagaatcggcgattctatgccgaaaaaatgggcgagattgttaccgag
cgtttggccgagtcgttcccgaatttgatggattatgatttcacggctcgcttggaagac
gagttggatcatatagctggcggcgaagtgaagtggaaaaaggtgctcaatgatttctac
gccaagttccgcaaacagctcgacagcgccagtcagacggaaggcggaatgcgtgctaat
acgccgactgagactgacataccgtgccccagttgtggacggaatatgcagattcgtgtg
gcgagtactggtgtcttccttggttgctcagggtatgcgttaccgcctaaagaacgttgt
aagactacaatcaacctcgtatctggcgatgaggttgtgagtgcggacgaagatgtagaa
ggcgagggcgaaactcgtctcctgcgaatgaagcgtcggtgcggcaagtgcggtaccgcc
atggacagctacctggttgatgaagcacgtaagttgcatgtatgcggtaataatcccgat
tgctctggctatgaagtagagcaaggcacattccggatcaagggttacgacggccctacg
ctggagtgtgataagtgcggttcggagatgcagctcaagactgggcgctttggtaagtac
tttggctgcacgagtgatgactgtaagaacacccgtaagttattgaagagtggagagcct
gctccacccaagatggatccggtgccgatgcctgagctgcagtgtcaaaaggttgatgat
acctatgttctgcgtgatggtgcctcgggattgttcctggctgcgagcaaattcccgaaa
aaccgggaaactcgtccgccattggtcatggaaatcaaaccgcaccggaaggaaattgat
ccgaagcacgattatttgatggatgcaccggagaaagaccctgaaggcaatccaaccgtt
attcgttacagtcggaaaaccaaagagcagtacgttatgtcagaaaacgacggcaaagcg
acaggttggtctgcttggtacgagggcggccgctgggtgccaagggataagaagaaaaag
taa
DBGET
integrated database retrieval system
