Marinobacter sp. JH2: MARI_10930
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Entry
MARI_10930 CDS
T06162
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
marj
Marinobacter sp. JH2
Pathway
marj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
marj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MARI_10930 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
marj03019
]
MARI_10930 (recQ)
03400 DNA repair and recombination proteins [BR:
marj03400
]
MARI_10930 (recQ)
Enzymes [BR:
marj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MARI_10930 (recQ)
Messenger RNA biogenesis [BR:
marj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MARI_10930 (recQ)
DNA repair and recombination proteins [BR:
marj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MARI_10930 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
DprA_WH
HHH
Motif
Other DBs
NCBI-ProteinID:
QBM16989
LinkDB
All DBs
Position
1180975..1182843
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AA seq
622 aa
AA seq
DB search
MYQDHDFEQLAKERPSVSDKSPEQVLHEVFGYESFRPLQGDIVQEVIRGGDALVLMPTGG
GKSLCYQVPALVRTGTAIVISPLIALMQDQVNALRELGVKAAFLNSSMDFEQARATEYAL
MTGELDLLYCAPERLIQPRIIELLHSASLSMFAIDEAHCVSQWGHDFRSDYLQLSMLAEE
FPGVPRIALTATADERTRKEIAERLSLTSARHFVSGFDRPNIQYRITPKTNANKQLLDFI
KVEHQDDCGIVYCLSRNKVDATTKLLAEKGYTALPYHAGLSNEERSRNQERFLREDGVIV
VATIAFGMGIDKPDVRFVAHLDLPKSLEAYYQETGRAGRDGKPSTAWMVYGLQDVIKLRQ
MLETSQGNDQFKRVERQKLDAMLGLCEVTQCRRQVLLRYFGDTLEKPCGNCDTCLTPPET
WDGTVAVQKALSCVFRTGQRYGVTYLIDVLRGSSNERILQAGHQTISTFGIGTELSANEW
KSVFRQLVANGYLRADPEGYGALQLTEICRPLLKGKQKVELRKDPVVKKSSGNNSSKRSG
ANVKDQITDQAGWDALRACRKELADKQGVPPYVIFHDTTLFDMLERRPTSLDELAEVSGV
GAAKLEKYGDIFLQTLREMPQA
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgtaccaggatcatgacttcgagcaattagccaaagagcgcccatcggtttctgataaa
agtccggaacaggtactccatgaggtttttggctatgaaagttttcgcccgctacagggt
gacatcgttcaagaagtcattagaggcggcgatgctctggtactgatgcccactggcgga
ggtaaatcgctttgttaccaagtaccagcattagttcgaaccggaacggccatcgtgatt
tcgccattgattgcgttgatgcaggatcaagtgaacgcgttgcgtgaactaggcgtgaaa
gcggcattcctgaactcctcgatggactttgagcaagctcgcgccacagagtacgctttg
atgaccggtgagctggatctgctttattgcgccccagaacgcctgattcaacctcgcatt
attgaactgcttcacagcgcatcgctttcgatgttcgcaattgacgaagctcattgcgtg
tctcaatgggggcatgattttcggtcggattacctacagctcagcatgctggcagaagaa
ttcccaggtgtgcctcgcatcgctctgacagccacagcagatgagcgcacgcgcaaagag
atcgcggagcgcctctcgctcaccagcgcgaggcacttcgtcagcggcttcgaccgcccg
aacattcaataccgaataacaccaaaaactaatgcaaacaaacagttactggattttatc
aaagtcgaacatcaagatgattgcggtattgtttattgtctatcacggaataaggtagat
gccacgaccaaactgttggcggaaaaaggctataccgcactgccctatcacgctggtttg
tccaacgaagagcgatcgcgaaatcaggagcgttttctccgggaagatggtgtgattgtt
gtcgcgaccattgcctttggtatgggcatcgacaaacccgatgtgcgcttcgtggcacac
cttgatttaccgaaaagcctagaggcctactatcaagaaaccggccgtgcaggccgtgat
gggaagccttcgaccgcctggatggtttatggcttgcaagatgtcatcaaactgcgccaa
atgttggaaacttcccaaggcaacgatcaattcaagcgggttgaacgtcagaaactggat
gcgatgttagggctttgcgaagtcactcagtgtcgtcgccaggtactgcttcgctatttt
ggcgataccttggaaaaaccttgcgggaactgtgatacctgcctaactccacctgaaacc
tgggatggcaccgtagcggtgcagaaagcgctgtcctgtgtattccgcaccggccaacgt
tacggcgtgacttatctgattgatgtattgagaggctcaagtaacgaacgtattcttcaa
gctggccatcaaaccatatctaccttcggcatcggtaccgaattatcagccaacgaatgg
aaatcggtattccggcaactggtcgccaacggctatctgcgcgcggatccagaagggtac
ggcgcactccaactaacagaaatatgtcgcccgttattaaaaggtaaacagaaagtcgag
ctacgaaaagatccggtcgtgaagaaatcgtccggcaataattcgagcaagcgcagcggt
gccaatgttaaagatcaaatcacggaccaggctggatgggatgccctgcgagcatgccga
aaagagctggcggacaagcaaggtgtgccgccttatgtgatcttccacgacaccaccctg
ttcgacatgttggaacgtcggccaacgtcgttggatgagctggcagaagtcagcggcgtg
ggcgcagcgaagctggaaaaatacggtgacattttcctgcaaacgctgcgcgaaatgcct
caggcctga
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