Marinobacter sp. JH2: MARI_15830
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Entry
MARI_15830 CDS
T06162
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
marj
Marinobacter sp. JH2
Pathway
marj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
marj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MARI_15830 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
marj03400
]
MARI_15830 (mfd)
Enzymes [BR:
marj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MARI_15830 (mfd)
DNA repair and recombination proteins [BR:
marj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MARI_15830 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
SecA_DEAD
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QBM17468
LinkDB
All DBs
Position
1705693..1709226
Genome browser
AA seq
1177 aa
AA seq
DB search
MAQGSTNTFANISLIAPAAPAQAADHRKWGQLQGCSQALAICESARSHKGLTLVVTRSTD
EAIRLEQAVRFFLSLPPEEDGAAISEDGLELLSLPDWETLPYDLFSPHQDITSRRIRTLH
RLPSTDHGILIVPARTLMHRLAPPSYLQGNTLLLKTGQTLNIDNWRMQLEAAGYHHAENV
YEHGEYAVRGAILDIYPMGSNLPYRIDLFDDEIETLRTFDPETQRSIERIEQIELLPAHE
FPWHKEARSGFRNRWFEYFPHSDKDSPVYQDVSNGITPPGIEYYLPLFFEQTATLFDYLP
ASTLVFTEDGLNDAIQAFDSETRARHEDRRHDRLRPILPPAELFLLQEEALGQLKRYPRV
TCSPEPTSGAGSANCAAEALPDIAMDGRAADPAGRLKRFLNDFPGRVLICAESSGRREAL
IENLESQKLKLSTVTSWQEFLAQNDTSLAITIAPMEQGMVLPEQNLALITETALFGERVL
QRRRREKPTEVDDAGYRDLSELRIGSPVVHIDHGVGRYKGLETISAGGESNEFLTLEYAG
GSKLYVPVSSLHLISRYAGTDEEHAPLHKLGTDRWSNAKQKALEKIRDTAAELLDVYARR
EARKGFQFEDPKEAYRAFAAGFPFEETPDQQVAIQAVFEDMTSEQPMDRLVCGDVGFGKT
EVAMRAAFLATWSGKQVAVLVPTTLLAQQHYESFRDRFSDTPVSIELLSRFRSGTQTSKA
MSAIEEGKADIVIGTHKLLQGDVKFKNLGLVIIDEEHRFGVQQKEKLKALRAEVDMLNLT
ATPIPRTLNMAMGHLRDLSIIATPPARRLSVKTFVRQRDEAMVKEAILREILRGGQVYFL
HNDVSTIEKTAEDLRRLIPEARVGVGHGQMRERQLEQVMSDFYHKRFNVLVCTTIVETGI
DVPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKSISADAKKRLDAISE
AQDLGAGFMLATHDLEIRGAGELLGDEQSGQIESIGFTLYMQLLDEAVKAIREGRTPNAE
LPLSHGTEMNLRIPAIIPEDYLPDVHNRLMLYKRIASVKEETELKELQVEMIDRFGLLPE
PAKNLVRQTQLRLMAEGLGIDKVDAGKEWVRLEFGASTPVDPLILVKKVQSAPDTYRLEG
ANSFRFRLNDDSTNGKLDAIAAMLTELGPHDSKAKAS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaggttcaaccaacaccttcgcgaacatttctctgatcgcgcccgcagcaccc
gcgcaagcagccgatcacagaaaatgggggcagctgcagggctgcagtcaggctctcgca
atctgtgaaagtgcaagaagccacaaaggcttgacactcgtcgtcaccagaagcaccgat
gaggccattcgactagagcaagcggttcggtttttccttagcctgccgcccgaagaggac
ggcgcagctatctctgaagacggcttggagctgttatcgctacctgactgggagactctg
ccctatgaccttttctctccccatcaggacatcacttcccggcgcattcgcaccctgcac
cgtctgccgtctactgatcacggtattttaatcgttccggcacgaaccttgatgcaccgg
ctggcaccgcccagctatttgcaaggcaacactttacttctaaaaaccggtcagacactg
aacatcgacaactggcgcatgcaactggaagctgctggatatcaccatgctgaaaacgtg
tacgagcacggcgaatacgcagttcggggcgcaattctcgatatctacccgatgggctcc
aacctgccctaccgaatagacctgtttgacgatgaaatcgaaactctaagaaccttcgac
ccggaaactcagcgctcaatcgagcgcatcgaacaaatcgagctgctacccgcacacgaa
ttcccttggcataaagaagcacgctccgggtttcgcaaccggtggtttgaatacttccct
cactcggataaagattccccggtctatcaggatgtgagcaacggcattacccctcccggc
atcgaatattatttgccgttgttctttgagcaaacggcgacgctcttcgattatctgcca
gcgtccaccttggtctttacagaagatggcttgaacgatgctattcaagcattcgacagc
gaaacccgtgctagacacgaggacagacggcacgaccgcctgcgtccgattttaccgcct
gccgagctctttctgttacaagaagaggcgcttggccagttaaaacgttatccccgggtc
acttgcagcccagagccgacatccggtgcaggctctgctaattgcgccgctgaggcacta
cccgatatcgccatggacggccgcgcggccgacccggcaggacgactcaaacgctttctc
aacgattttccgggccgcgtcctcatttgcgccgagtcttcaggtcgccgcgaagcactg
atcgaaaacctagagagccagaaacttaaactgagcaccgtgactagctggcaggaattt
ctcgctcaaaacgacaccagcctggcaattaccattgccccgatggaacaaggcatggtg
ttgcccgaacaaaacctggctctgatcactgaaaccgctctgtttggcgagcgggtactg
caacgccggcgccgtgaaaagccaacggaagtggacgatgccggttatcgagatctgtcg
gagcttcgaatcgggtcaccggtggtgcacattgaccacggcgtaggccgctacaaaggg
ctcgaaaccatcagtgccggtggtgaatccaatgaatttctgacactggaatacgccggc
ggctcgaaattgtacgttccggtttctagtctgcatctgatttcgcgctacgccggcact
gacgaagaacacgcgcccctgcacaagctagggaccgaccgctggagcaacgccaagcaa
aaagcgctggagaagatccgcgacacggcagccgagctgctggatgtgtatgcacgccgg
gaagcccgaaaaggcttccagttcgaggaccctaaagaagcctatcgagcctttgctgca
ggcttcccatttgaggaaaccccggatcagcaagttgcaattcaagctgtcttcgaagac
atgaccagtgagcaaccgatggatcgcttggtatgcggcgacgttggttttggaaaaacc
gaggttgcgatgcgcgcagcttttctggccacttggtccggcaaacaggttgctgttttg
gtgccaacaaccttgctggcccaacaacactacgagtctttccgtgaccgtttttcagat
acaccggtttccattgagctgctaagtcgattcagaagcggcacccaaaccagtaaagcc
atgtccgccatagaggaaggcaaagcggatattgttatcggcactcacaagcttctgcaa
ggcgacgtgaaattcaaaaatctgggtttggtcattattgatgaagaacaccgcttcggc
gttcagcaaaaggaaaagttgaaggccctacgcgctgaagtcgacatgctcaatctcacc
gccacgccgattccgagaactctgaacatggccatggggcacctgcgcgacctctcgata
atcgccaccccgcccgctcgccgcctctcggtaaaaaccttcgttcgccaacgggacgaa
gccatggtgaaagaagccattcttcgtgaaattctccgtggtggtcaggtctactttctg
cacaacgatgtttccaccattgagaaaacggccgaagacctccgcaggctaatcccggaa
gcccgagtgggcgttggacacggccaaatgcgggagcgccagctggaacaggtcatgtcg
gatttttatcacaaacgcttcaacgttctggtgtgcaccaccattgttgaaaccggcatc
gatgtacccagcgccaacaccatcattatcgaacgagcggataaattcggtctggcccag
ctccaccaactgcgcggccgggttggccgttctcaccatcaggcttatgcttatctgctg
acgccgccacccaagagcatttccgctgatgccaagaagcgactggatgcgatttcagaa
gctcaggatcttggcgccgggttcatgctagccactcacgatctagagattcgaggcgca
ggcgaattattgggcgacgaacaaagcggccagatcgaaagcatcggcttcactttatat
atgcagttattagatgaagcagtgaaggccattcgcgagggccgaacacccaatgcggag
ctgccactgagccacggcacggaaatgaaccttcgtattccggcgatcattcccgaagat
tacctgccagacgttcacaatcgcttgatgctgtataaacgcatcgccagcgtaaaagaa
gaaaccgaattaaaagaacttcaggttgaaatgattgaccgctttggattattgccggag
cccgccaaaaatcttgtacgccagactcagctccgattaatggcggaaggcctgggcatc
gataaagtggacgctggcaaggaatgggtacgtctggaatttggcgccagcaccccggtt
gatccgctgattctggttaaaaaagtgcaatccgcaccggacacataccggctagaaggc
gccaacagcttccgcttccggctgaatgatgactcaaccaatggtaaactcgacgccatc
gcagccatgctgaccgagcttggccctcatgactcaaaagccaaggcttcttga
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integrated database retrieval system
