Marinobacter sp. JH2: MARI_19720
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Entry
MARI_19720 CDS
T06162
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
marj
Marinobacter sp. JH2
Brite
KEGG Orthology (KO) [BR:
marj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
marj03009
]
MARI_19720 (rlmD)
Enzymes [BR:
marj01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
MARI_19720 (rlmD)
Ribosome biogenesis [BR:
marj03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
MARI_19720 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
TRAM
PCMT
MTS
Methyltrans_SAM
Cons_hypoth95
Methyltransf_11
Methyltr_RsmB-F
RrnaAD
Methyltransf_15
Ubie_methyltran
Methyltransf_23
Methyltransf_12
UPF0020
CMAS
PrmA
MetW
FtsJ
DNA_methylase
Motif
Other DBs
NCBI-ProteinID:
QBM17851
LinkDB
All DBs
Position
complement(2159220..2160572)
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AA seq
450 aa
AA seq
DB search
MSRRRRKVLPQEPVRCEIENLGHDGRGIARADGKVQFVDGGLPGETVMAKVVGSRSKFDE
LRTLEVLEAAPDRQQPPCKFADLCGGCSLQHMSADAQIRFKENTLREHFAHFGGIEPEEW
VEPMRSPESLGYRRKARLGVRYVKARESVLVGFREKRNSFLTDIDECVVLDPRIGERIMP
LRELLHGMAAFDRIAQVEVACGDDHAAMVFRNMDALVPEDQEKLIAFGQAHDLHIYLQPK
GPDTVHRIWPDSSGRDDERLSYRMEEFDLTMQFHPMDFTQVNAGINGKMVHRAVEWLDVQ
PGERVLDLFCGLGNFTLPLARKGGQVVGVEGDDAMVVRGRENAKLNGLENVEFFGADLHG
DFTDQSWAKEGFDKILIDPPRSGAEDICKYLTAFGADQIVYVSCNPATLARDAGVMVNNG
YRLVRAGVMDMFPHTTHVESIALFERDQRK
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgagtagacgccgccgtaaggttctgccgcaagaacccgtgcgttgtgagattgaaaac
cttggccacgatggccggggtattgcccgtgccgacggaaaagtccagttcgttgacggc
ggtttgccgggcgaaacggtgatggcgaaagtggtgggtagccgcagcaagtttgatgag
ttgcgcactttggaagtgttggaagcggctccggatcgccagcagccaccgtgcaaattt
gccgacttgtgcggcggctgcagcctgcaacacatgagtgccgacgcccagatacgcttt
aaggaaaacactctgcgcgagcatttcgcgcactttggcggtattgagccagaagagtgg
gtcgagcccatgcgttcgccggaatcgcttggataccgccgtaaggcacgcttgggagtg
cgttacgtaaaagcccgggaatctgtactggttggcttccgtgagaagcgcaacagcttt
ctgaccgatatcgatgagtgtgtggtgctggatccccgtattggtgagcggatcatgccg
ttgcgcgaactgttgcacggtatggcagcgtttgatcgtattgcacaagtagaggtggcg
tgtggtgatgatcatgccgctatggtattccgcaatatggatgcgctggtgccggaagac
caggaaaaactgatcgcctttggtcaggcacatgacctgcacatctatcttcagccgaaa
ggcccggatacggttcatcgaatctggcccgactcttccggtcgcgatgacgagcgtttg
agttaccgcatggaagagtttgatctgactatgcagttccatccgatggacttcacgcaa
gtgaatgcggggatcaacggcaagatggtgcatcgtgcggtggaatggcttgatgttcag
cccggtgagcgggtgttggatctgttctgcggtctgggcaacttcacgttgccgctggct
cgaaagggtgggcaggttgttggagtggaaggcgacgatgccatggtggttcgtggtcgt
gagaacgccaagctgaacggtttggaaaacgtagagtttttcggggctgatttgcatggc
gatttcaccgatcaaagctgggccaaggaggggtttgataaaatcctgattgatccgccc
cgctctggtgccgaagacatctgtaagtatctgacggctttcggtgccgatcagattgtg
tatgtgtcgtgcaacccggcaaccttggccagagatgccggtgtcatggtgaataatggt
taccgcctcgtgcgtgcgggtgtgatggacatgttcccgcacacgactcacgttgagtcg
attgccttgttcgagcgcgaccagcgtaaatga
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