Marinobacter sp. JH2: MARI_20780
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Entry
MARI_20780 CDS
T06162
Symbol
rnr_1
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
marj
Marinobacter sp. JH2
Pathway
marj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
marj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MARI_20780 (rnr_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
marj03019
]
MARI_20780 (rnr_1)
03016 Transfer RNA biogenesis [BR:
marj03016
]
MARI_20780 (rnr_1)
Enzymes [BR:
marj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MARI_20780 (rnr_1)
Messenger RNA biogenesis [BR:
marj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MARI_20780 (rnr_1)
Transfer RNA biogenesis [BR:
marj03016
]
Prokaryotic type
tRNA degradation factors
MARI_20780 (rnr_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
OB_Dis3
OB_HELZ2
CSD
HOASN
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QBM17955
LinkDB
All DBs
Position
complement(2270533..2272983)
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AA seq
816 aa
AA seq
DB search
MVSKKKNIRDPHADREAQKYDNPIQSREFILNHLKERGAPATHETLCEELGQASEAGVEA
LRRRLIAMCRDGQLICNRRNAFLPIEEAALVTGKISGHRDGFGFLIPDDGSSDLFLTARQ
MRQVFHGDRVAARVDRVDDRGRREGVIVEVLEHRTEQTVGRFFKESGIAFVVPENARINH
EILIPDENVGAAVHGQYVVVEILRQPTVRTQPTGRVVEVLGEHMAPGMEIDVAIRSYEIP
HGWSEAVGEQAAAIPSEVEEKDKVNRVDIRNMRLVTIDDESARDFDDAIYCEPRPRGGYR
LVVAIADVSHYVRAGSPLDEEAFERGNSVYFPDHVVPMLPEKLSNGLCSLNPSVDRLCMV
ADMTISAAGNISGYTFYQAVMRSHARLTYNKVSAMLEHPDTEQGYQLSAHYADLLPHLHN
LYELYKLLRKARTERGAIDFETTETKVVFDAERKIEEIVPVHRNDAHKIVEECMLCANVA
TARFLKKHKMPALYRVHDGPSEERLGKLRLFLSELGLQLGGGDRPTSADYQKLLSEVADR
SDAHVIQMVMLRSLSQAVYSPEESGHFGLGFASYAHFTSPIRRYPDLIVHRAIKSCIHNP
EVQKDVVSPKQLDAELAAYPYDYAKVEQLGEHCSMTERRADDATRDVMAWLKCEFLKDHV
GEEYAGVIAAVVPFGFFVELSDIYIEGLVHVSTLNGDYFHHDAAKHRMIGERTAVSFRLG
DEVRVKVVRVGLEDRKIDLELTSKPQKRTADRDALDIAKREPRNKGDRAGKGAKRGKSGK
PASAKERLASEAAREAVKKGSKDKPAAASKKRKSRK
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atggtttccaagaaaaaaaatatacgggaccctcacgctgatcgtgaggcccagaaatac
gataaccccatccaaagccgggagtttatcctcaatcatctgaaagagcgtggcgcccca
gccactcacgaaaccctgtgcgaagaattggggcaggcgtctgaggccggtgttgaggca
ttacgccgccgtttgattgcgatgtgccgtgatgggcagttgatctgtaatcgccggaac
gcgtttttgccgatcgaagaagccgctttggtgacgggtaagatctcggggcaccgggat
ggttttggctttttgatacccgatgatggcagttccgacctgtttttgactgcgcgtcag
atgcgccaggtctttcatggtgacagagttgctgcgcgagttgatcgtgttgatgaccgt
ggccgccgtgaaggtgtgatcgtcgaggtgctcgaacaccgtaccgagcaaaccgtgggg
cgtttcttcaaggagagcggcattgcctttgtcgttcctgaaaatgctcgtatcaatcac
gagattctgattccggacgagaatgtcggtgctgctgtgcacggtcagtatgtggttgtt
gaaatcttgcgccagccaaccgtgcgcacccagccaacggggcgcgtcgtcgaagtgttg
ggagaacacatggctccgggcatggaaatagacgttgccattcgctcttatgagattccg
catggctggtctgaggctgtcggcgagcaagcagcggcgatcccttcggaagttgaggaa
aaagacaaggtaaaccgcgttgatattcgaaatatgcggctggtgaccatcgatgatgag
tccgcccgtgatttcgatgatgcgatctactgtgagccgcgccctcgcggtggttaccgc
ttggtcgtggcgattgccgacgtgtctcattatgtgcgcgctggctccccgcttgacgaa
gaagcgttcgagcgtggcaactcggtttattttccggatcacgtcgtaccgatgctgccg
gagaagctgtccaacggattgtgttcgttgaatccgagtgttgatcgtttgtgcatggtg
gcagacatgaccatcagtgcagcgggcaatatcagtggctataccttctatcaagcggtt
atgcgtagtcatgcacggctgacttacaacaaggtaagtgccatgctggagcatcctgac
accgagcagggttatcagctgagtgcgcattacgcagacttgttgccgcacctgcataac
ttgtacgagctttacaaacttcttcgcaaggcgcgtaccgaacgtggcgcgatcgatttc
gaaaccactgaaaccaaggtggtgtttgatgcggagcgtaagattgaagagatcgtgccg
gtgcaccgaaacgacgctcacaagatcgtagaagagtgcatgttgtgcgcaaacgtggct
acggcccgtttcctgaaaaagcacaaaatgccggcgctgtatcgggtgcatgacggccct
tccgaggagcgtttaggcaagctgaggttgttcctgagtgagctggggcttcagttaggc
ggcggtgatcggccaacgtcagcggattaccaaaagctgttgtctgaggtggccgaccgg
tcggatgcccatgtgattcagatggtcatgctgcggtcgctgagtcaggcggtttatagc
cctgaagaaagtggtcatttcgggctcgggtttgccagctacgcgcattttacatcgccc
attcgacgttatccggatttgattgtgcacagggctattaagtcttgcattcataatccc
gaggttcaaaaggatgtggtgtcacccaagcagcttgatgctgaattggcggcttacccc
tacgactatgccaaggttgaacagttgggtgagcattgctccatgactgagcggcgcgca
gatgacgcgacccgcgatgtgatggcctggctcaagtgtgaattcctcaaagatcacgta
ggcgaggaatacgccggtgtcattgcggcggttgtgccctttggtttcttcgtggagttg
tccgatatttatattgaagggctggtacatgtatcgaccctgaatggcgattacttccat
cacgatgcggcgaagcaccgaatgatcggagagcgcacggctgtgagcttccgcttgggt
gatgaagtgcgagtgaaggttgttcgagttgggctggaagatcgcaagatcgacctggag
ctgaccagcaagcctcaaaagcgcaccgccgaccgggatgcgcttgatattgccaagcga
gagcctcgtaacaaaggtgaccgagccggcaagggcgctaagcgtgggaagtctggaaaa
ccggccagcgcgaaagagcggcttgccagcgaggctgcccgagaggccgtgaaaaaaggc
tctaaagacaagccggcggctgccagcaagaagcgcaagagccgcaagtaa
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